Publications by Karin Lagesen
42 publications found
Original articles
Draft genome sequences of 13 Tenacibaculum maritimum isolates from farmed Norwegian Cyclopterus lumpus (lumpfish) and Scophthalmus maximus (turbot)
Microbiol Resour Announc, e0016524 (in press)
DOI 10.1128/mra.00165-24, PubMed 38682771
Phylogeography and host specificity of Pasteurellaceae pathogenic to sea-farmed fish in the north-east Atlantic
Front Microbiol, 14, 1236290
DOI 10.3389/fmicb.2023.1236290, PubMed 37808299
Escherichia coli multilocus sequence type 38 from humans and broiler production represent distinct monophyletic groups
Front Microbiol, 14, 1173287
DOI 10.3389/fmicb.2023.1173287, PubMed 37266008
Draft Genome Sequences of 23 Tenacibaculum Isolates from Farmed Norwegian Lumpfish, Cyclopterus lumpus
Microbiol Resour Announc, 11 (4), e0124921
DOI 10.1128/mra.01249-21, PubMed 35289652
Closed Genome Sequences of Providencia alcalifaciens Isolates from Dogs
Microbiol Resour Announc, 11 (2), e0095521
DOI 10.1128/mra.00955-21, PubMed 35175129
Tenacibaculosis in Norwegian Atlantic salmon (Salmo salar) cage-farmed in cold sea water is primarily associated with Tenacibaculum finnmarkense genomovar finnmarkense
J Fish Dis, 45 (4), 523-534
DOI 10.1111/jfd.13577, PubMed 35001372
An Official Outbreak Investigation of Acute Haemorrhagic Diarrhoea in Dogs in Norway Points to Providencia alcalifaciens as a Likely Cause
Animals (Basel), 11 (11)
DOI 10.3390/ani11113201, PubMed 34827932
One Health Surveillance Codex: promoting the adoption of One Health solutions within and across European countries
One Health, 12, 100233
DOI 10.1016/j.onehlt.2021.100233, PubMed 33786360
Tenacibaculum piscium sp. nov., isolated from skin ulcers of sea-farmed fish, and description of Tenacibaculum finnmarkense sp. nov. with subdivision into genomovars finnmarkense and ulcerans
Int J Syst Evol Microbiol, 70 (12), 6079-6090
DOI 10.1099/ijsem.0.004501, PubMed 33079030
Comparative Genome Analyses of Wild Type- and Quinolone Resistant Escherichia coli Indicate Dissemination of QREC in the Norwegian Broiler Breeding Pyramid
Front Microbiol, 11, 938
DOI 10.3389/fmicb.2020.00938, PubMed 32508776
Dissemination of Quinolone-Resistant Escherichia coli in the Norwegian Broiler and Pig Production Chains and Possible Persistence in the Broiler Production Environment
Appl Environ Microbiol, 86 (7)
DOI 10.1128/AEM.02769-19, PubMed 31953334
Adding Complexity to Complexity: Gene Family Evolution in Polyploids
Front. Ecol. Evol., 6, 114
DOI 10.3389/fevo.2018.00114
Multilocus Variable-Number Tandem-Repeat Analysis of Yersinia ruckeri Confirms the Existence of Host Specificity, Geographic Endemism, and Anthropogenic Dissemination of Virulent Clones
Appl Environ Microbiol, 84 (16)
DOI 10.1128/AEM.00730-18, PubMed 29884756
Occurrence of quinolone resistant E. coli originating from different animal species in Norway
Vet Microbiol, 217, 25-31
DOI 10.1016/j.vetmic.2018.02.022, PubMed 29615252
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences
BMC Bioinformatics, 18 (1), 338
DOI 10.1186/s12859-017-1748-z, PubMed 28701187
Pathogens in Urine from a Female Patient with Overactive Bladder Syndrome Detected by Culture-independent High Throughput Sequencing: A Case Report
Open Microbiol J, 8, 148-53
DOI 10.2174/1874285801408010148, PubMed 25685246
Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment
PLoS One, 9 (8), e106510
DOI 10.1371/journal.pone.0106510, PubMed 25171164
Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response
Sci Rep, 3, 3053
DOI 10.1038/srep03053, PubMed 24157950
From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains
Appl Environ Microbiol, 79 (21), 6803-12
DOI 10.1128/AEM.01455-13, PubMed 23995927
Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche
BMC Genomics, 14, 81
DOI 10.1186/1471-2164-14-81, PubMed 23384204
CMG-biotools, a free workbench for basic comparative microbial genomics
PLoS One, 8 (4), e60120
DOI 10.1371/journal.pone.0060120, PubMed 23577086
Using high-throughput sequencing to investigate the evolution of self-incompatibility genes in the Brassicaceae: strategies and challenges
Plant Ecol. Divers., 5 (4), 473-484
DOI 10.1080/17550874.2012.748098
Alterations of microbiota in urine from women with interstitial cystitis
BMC Microbiol, 12, 205
DOI 10.1186/1471-2180-12-205, PubMed 22974186
Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli
Microb Inform Exp, 2 (1), 8
DOI 10.1186/2042-5783-2-8, PubMed 22929701
Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons
BMC Microbiol, 11, 244
DOI 10.1186/1471-2180-11-244, PubMed 22047020
The genome sequence of Atlantic cod reveals a unique immune system
Nature, 477 (7363), 207-10
DOI 10.1038/nature10342, PubMed 21832995
Tiling array analysis of UV treated Escherichia coli predicts novel differentially expressed small peptides
PLoS One, 5 (12), e15356
DOI 10.1371/journal.pone.0015356, PubMed 21203457
Genomic characterization of Campylobacter jejuni strain M1
PLoS One, 5 (8), e12253
DOI 10.1371/journal.pone.0012253, PubMed 20865039
Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods
BMC Evol Biol, 10, 249
DOI 10.1186/1471-2148-10-249, PubMed 20707916
Analysis of intra-genomic GC content homogeneity within prokaryotes
BMC Genomics, 11, 464
DOI 10.1186/1471-2164-11-464, PubMed 20691090
Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays
PLoS One, 4 (6), e5943
DOI 10.1371/journal.pone.0005943, PubMed 19536279
The genus burkholderia: analysis of 56 genomic sequences
Genome Dyn, 6, 140-157
DOI 10.1159/000235768, PubMed 19696499
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
Nucleic Acids Res, 35 (9), 3100-8
DOI 10.1093/nar/gkm160, PubMed 17452365
Biased distribution of DNA uptake sequences towards genome maintenance genes
Nucleic Acids Res, 32 (3), 1050-8
DOI 10.1093/nar/gkh255, PubMed 14960717
Review articles
Polyether ionophore resistance in a one health perspective
Front Microbiol, 15, 1347490
DOI 10.3389/fmicb.2024.1347490, PubMed 38351920
On the origins of a Vibrio species
Microb Ecol, 59 (1), 1-13
DOI 10.1007/s00248-009-9596-7, PubMed 19830476
Genome dynamics in major bacterial pathogens
FEMS Microbiol Rev, 33 (3), 453-70
DOI 10.1111/j.1574-6976.2009.00173.x, PubMed 19396949
Other articles
Genome update: the 1000th genome--a cautionary tale
Microbiology (Reading), 156 (Pt 3), 603-608
DOI 10.1099/mic.0.038257-0, PubMed 20093288
Genome update: tRNAs in sequenced microbial genomes
Microbiology (Reading), 150 (Pt 6), 1603-1606
DOI 10.1099/mic.0.27260-0, PubMed 15184546
Genome update: rRNAs in sequenced microbial genomes
Microbiology (Reading), 150 (Pt 5), 1113-1115
DOI 10.1099/mic.0.27173-0, PubMed 15133066
Theses
Computational characterization of ribosomal RNAs in prokaryotes
In Series of dissertations submitted to the Faculty of Medicine, University of Oslo, Unipub, Oslo, no. 709, 1 b. (flere pag.)
BIBSYS 082930406, ISBN 978-82-8072-773-2
The topology of pore proteins: developing tools for making and analysing topological models for FomA porins from Fusobacteria sp
[K. Lagesen], Bergen, V, 146 s.
BIBSYS 02225188x