Publication list - Publika - Scientific publications from Oslo University Hospital

Publications by Ioannis P. Nezis

75 publications found

Original articles

Chatzichristofi A, Sagris V, Pallaris A, Eftychiou M, Kalvari I, Price N, Theodosiou T, Iliopoulos I, Nezis IP, Promponas VJ (2023)
LIRcentral: a manually curated online database of experimentally validated functional LIR motifs
Autophagy, 19 (12), 3189-3200
DOI 10.1080/15548627.2023.2235851, PubMed 37530436

Rogov VV, Nezis IP, Tsapras P, Zhang H, Dagdas Y, Noda NN, Nakatogawa H, Wirth M, Mouilleron S, McEwan DG, Behrends C, Deretic V, Elazar Z, Tooze SA, Dikic I, Lamark T, Johansen T (2023)
Atg8 family proteins, LIR/AIM motifs and other interaction modes
Autophagy Rep, 2 (1)
DOI 10.1080/27694127.2023.2188523, PubMed 38214012

Zhang Y, Nezis IP (2022)
Label-free quantitative proteomic analysis of adult Drosophila heads
STAR Protoc, 3 (4), 101830
DOI 10.1016/j.xpro.2022.101830, PubMed 36386889

Lalo U, Nezis IP, Pankratov Y (2022)
Impact of Autophagy Impairment on Experience- and Diet-Related Synaptic Plasticity
Int J Mol Sci, 23 (16)
DOI 10.3390/ijms23169228, PubMed 36012495

Demeter A, Jacomin AC, Gul L, Lister A, Lipscombe J, Invernizzi R, Branchu P, Macaulay I, Nezis IP, Kingsley RA, Korcsmaros T, Hautefort I (2022)
Computational prediction and experimental validation of Salmonella Typhimurium SopE-mediated fine-tuning of autophagy in intestinal epithelial cells
Front Cell Infect Microbiol, 12, 834895
DOI 10.3389/fcimb.2022.834895, PubMed 36061866

Rahman A, Lőrincz P, Gohel R, Nagy A, Csordás G, Zhang Y, Juhász G, Nezis IP (2022)
GMAP is an Atg8a-interacting protein that regulates Golgi turnover in Drosophila
Cell Rep, 39 (9), 110903
DOI 10.1016/j.celrep.2022.110903, PubMed 35649355

Tsapras P, Nezis IP (2022)
A yeast two-hybrid screening identifies novel Atg8a interactors in Drosophila
Autophagy, 18 (5), 1211-1212
DOI 10.1080/15548627.2022.2045535, PubMed 35226578

Tsapras P, Petridi S, Chan S, Geborys M, Jacomin AC, Sagona AP, Meier P, Nezis IP (2022)
Selective autophagy controls innate immune response through a TAK1/TAB2/SH3PX1 axis
Cell Rep, 38 (4), 110286
DOI 10.1016/j.celrep.2021.110286, PubMed 35081354

Jacomin AC, Gohel R, Hussain Z, Varga A, Maruzs T, Eddison M, Sica M, Jain A, Moffat KG, Johansen T, Jenny A, Juhasz G, Nezis IP (2020)
Degradation of arouser by endosomal microautophagy is essential for adaptation to starvation in Drosophila
Life Sci Alliance, 4 (2)
DOI 10.26508/lsa.202000965, PubMed 33318080

Jacomin AC, Petridi S, Di Monaco M, Nezis IP (2020)
A nuclear role for Atg8-family proteins
Autophagy, 16 (9), 1721-1723
DOI 10.1080/15548627.2020.1794356, PubMed 32686573

Jacomin AC, Petridi S, Di Monaco M, Bhujabal Z, Jain A, Mulakkal NC, Palara A, Powell EL, Chung B, Zampronio C, Jones A, Cameron A, Johansen T, Nezis IP (2020)
Regulation of Expression of Autophagy Genes by Atg8a-Interacting Partners Sequoia, YL-1, and Sir2 in Drosophila
Cell Rep, 31 (8), 107695
DOI 10.1016/j.celrep.2020.107695, PubMed 32460019

Chang K, Kang P, Liu Y, Huang K, Miao T, Sagona AP, Nezis IP, Bodmer R, Ocorr K, Bai H (2019)
TGFB-INHB/activin signaling regulates age-dependent autophagy and cardiac health through inhibition of MTORC2
Autophagy, 16 (10), 1807-1822
DOI 10.1080/15548627.2019.1704117, PubMed 31884871

Jacomin AC, Nezis IP (2019)
Selective autophagic degradation of the IKK complex in Drosophila is mediated by Kenny/IKKγ to control inflammation
Mol Cell Oncol, 7 (1), 1682309
DOI 10.1080/23723556.2019.1682309, PubMed 31993495

Jacomin AC, Geraki K, Brooks J, Tjendana-Tjhin V, Collingwood JF, Nezis IP (2019)
Impact of Autophagy and Aging on Iron Load and Ferritin in Drosophila Brain
Front Cell Dev Biol, 7, 142
DOI 10.3389/fcell.2019.00142, PubMed 31404236

Sudhakar P, Jacomin AC, Hautefort I, Samavedam S, Fatemian K, Ari E, Gul L, Demeter A, Jones E, Korcsmaros T, Nezis IP (2019)
Targeted interplay between bacterial pathogens and host autophagy
Autophagy, 15 (9), 1620-1633
DOI 10.1080/15548627.2019.1590519, PubMed 30909843

Jacomin AC, Nezis IP (2019)
Assays to Monitor Aggrephagy in Drosophila Brain
Methods Mol Biol, 1854, 147-157
DOI 10.1007/7651_2018_157, PubMed 29869325

Tsapras P, Jacomin AC, Nezis IP (2019)
Assays to Monitor Mitophagy in Drosophila
Methods Mol Biol, 1880, 643-653
DOI 10.1007/978-1-4939-8873-0_42, PubMed 30610728

Tusco R, Jacomin AC, Jain A, Penman BS, Larsen KB, Johansen T, Nezis IP (2017)
Kenny mediates selective autophagic degradation of the IKK complex to control innate immune responses
Nat Commun, 8 (1), 1264
DOI 10.1038/s41467-017-01287-9, PubMed 29097655

Jacomin AC, Samavedam S, Charles H, Nezis IP (2017)
iLIR@viral: A web resource for LIR motif-containing proteins in viruses
Autophagy, 13 (10), 1782-1789
DOI 10.1080/15548627.2017.1356978, PubMed 28806134

Jacomin AC, Samavedam S, Promponas V, Nezis IP (2016)
iLIR database: A web resource for LIR motif-containing proteins in eukaryotes
Autophagy, 12 (10), 1945-1953
DOI 10.1080/15548627.2016.1207016, PubMed 27484196

Tsapras P, Sagona AP, Nezis IP (2016)
Immuno-Gold Labeling of Drosophila Follicles for Transmission Electron Microscopy
Methods Mol Biol, 1457, 97-103
DOI 10.1007/978-1-4939-3795-0_7, PubMed 27557575

Palara A, Sagona AP, Nezis IP (2016)
Preparation of Drosophila Follicles for Transmission Electron Microscopy
Methods Mol Biol, 1457, 105-10
DOI 10.1007/978-1-4939-3795-0_8, PubMed 27557576

Jacomin AC, Nezis IP (2016)
Using Fluorescent Reporters to Monitor Autophagy in the Female Germline Cells in Drosophila melanogaster
Methods Mol Biol, 1457, 69-78
DOI 10.1007/978-1-4939-3795-0_5, PubMed 27557573

Eikenes ÅH, Malerød L, Christensen AL, Steen CB, Mathieu J, Nezis IP, Liestøl K, Huynh JR, Stenmark H, Haglund K (2015)
ALIX and ESCRT-III coordinately control cytokinetic abscission during germline stem cell division in vivo
PLoS Genet, 11 (1), e1004904
DOI 10.1371/journal.pgen.1004904, PubMed 25635693

Kalvari I, Tsompanis S, Mulakkal NC, Osgood R, Johansen T, Nezis IP, Promponas VJ (2014)
iLIR: A web resource for prediction of Atg8-family interacting proteins
Autophagy, 10 (5), 913-25
DOI 10.4161/auto.28260, PubMed 24589857

Sagona AP, Nezis IP, Stenmark H (2014)
Association of CHMP4B and autophagy with micronuclei: implications for cataract formation
Biomed Res Int, 2014, 974393
DOI 10.1155/2014/974393, PubMed 24741567

Nezis IP (2012)
The selectivity and specificity of autophagy in Drosophila
Cells, 1 (3), 248-62
DOI 10.3390/cells1030248, PubMed 24710475

Nezis IP (2012)
Selective autophagy in Drosophila
Int J Cell Biol, 2012, 146767
DOI 10.1155/2012/146767, PubMed 22567011

Bartlett BJ, Isakson P, Lewerenz J, Sanchez H, Kotzebue RW, Cumming RC, Harris GL, Nezis IP, Schubert DR, Simonsen A, Finley KD (2011)
p62, Ref(2)P and ubiquitinated proteins are conserved markers of neuronal aging, aggregate formation and progressive autophagic defects
Autophagy, 7 (6), 572-83
DOI 10.4161/auto.7.6.14943, PubMed 21325881

Sagona AP, Nezis IP, Bache KG, Haglund K, Bakken AC, Skotheim RI, Stenmark H (2011)
A tumor-associated mutation of FYVE-CENT prevents its interaction with Beclin 1 and interferes with cytokinesis
PLoS One, 6 (3), e17086
DOI 10.1371/journal.pone.0017086, PubMed 21455500

Haglund K, Nezis IP, Stenmark H (2011)
Structure and functions of stable intercellular bridges formed by incomplete cytokinesis during development
Commun Integr Biol, 4 (1), 1-9
DOI 10.4161/cib.4.1.13550, PubMed 21509167

Nezis IP, Shravage BV, Sagona AP, Johansen T, Baehrecke EH, Stenmark H (2010)
Autophagy as a trigger for cell death: autophagic degradation of inhibitor of apoptosis dBruce controls DNA fragmentation during late oogenesis in Drosophila
Autophagy, 6 (8), 1214-5
DOI 10.4161/auto.6.8.13694, PubMed 20935512

Nezis IP, Shravage BV, Sagona AP, Lamark T, Bjørkøy G, Johansen T, Rusten TE, Brech A, Baehrecke EH, Stenmark H (2010)
Autophagic degradation of dBruce controls DNA fragmentation in nurse cells during late Drosophila melanogaster oogenesis
J Cell Biol, 190 (4), 523-31
DOI 10.1083/jcb.201002035, PubMed 20713604

Shimokawa N, Haglund K, Hölter SM, Grabbe C, Kirkin V, Koibuchi N, Schultz C, Rozman J, Hoeller D, Qiu CH, Londoño MB, Ikezawa J, Jedlicka P, Stein B, Schwarzacher SW, Wolfer DP, Ehrhardt N, Heuchel R, Nezis I, Brech A, Schmidt MHH, Fuchs H, Gailus-Durner V, Klingenspor M, Bogler O et al. (2010)
CIN85 regulates dopamine receptor endocytosis and governs behaviour in mice
EMBO J, 29 (14), 2421-32
DOI 10.1038/emboj.2010.120, PubMed 20551902

Haglund K, Nezis IP, Lemus D, Grabbe C, Wesche J, Liestøl K, Dikic I, Palmer R, Stenmark H (2010)
Cindr interacts with anillin to control cytokinesis in Drosophila melanogaster
Curr Biol, 20 (10), 944-50
DOI 10.1016/j.cub.2010.03.068, PubMed 20451383

Sagona AP, Nezis IP, Pedersen NM, Liestøl K, Poulton J, Rusten TE, Skotheim RI, Raiborg C, Stenmark H (2010)
PtdIns(3)P controls cytokinesis through KIF13A-mediated recruitment of FYVE-CENT to the midbody
Nat Cell Biol, 12 (4), 362-71
DOI 10.1038/ncb2036, PubMed 20208530

Vaccari T, Rusten TE, Menut L, Nezis IP, Brech A, Stenmark H, Bilder D (2009)
Comparative analysis of ESCRT-I, ESCRT-II and ESCRT-III function in Drosophila by efficient isolation of ESCRT mutants
J Cell Sci, 122 (Pt 14), 2413-23
DOI 10.1242/jcs.046391, PubMed 19571114

Nezis IP, Lamark T, Velentzas AD, Rusten TE, Bjørkøy G, Johansen T, Papassideri IS, Stravopodis DJ, Margaritis LH, Stenmark H, Brech A (2009)
Cell death during Drosophila melanogaster early oogenesis is mediated through autophagy
Autophagy, 5 (3), 298-302
DOI 10.4161/auto.5.3.7454, PubMed 19066465

Nezis IP, Simonsen A, Sagona AP, Finley K, Gaumer S, Contamine D, Rusten TE, Stenmark H, Brech A (2008)
Ref(2)P, the Drosophila melanogaster homologue of mammalian p62, is required for the formation of protein aggregates in adult brain
J Cell Biol, 180 (6), 1065-71
DOI 10.1083/jcb.200711108, PubMed 18347073

Mpakou VE, Nezis IP, Stravopodis DJ, Margaritis LH, Papassideri IS (2007)
Different modes of programmed cell death during oogenesis of the silkmoth Bombyx mori
Autophagy, 4 (1), 97-100
DOI 10.4161/auto.5205, PubMed 17986869

Rusten TE, Vaccari T, Lindmo K, Rodahl LM, Nezis IP, Sem-Jacobsen C, Wendler F, Vincent JP, Brech A, Bilder D, Stenmark H (2007)
ESCRTs and Fab1 regulate distinct steps of autophagy
Curr Biol, 17 (20), 1817-25
DOI 10.1016/j.cub.2007.09.032, PubMed 17935992

Hatziantoniou S, Nezis IP, Margaritis LH, Demetzos C (2007)
Visualisation of liposomes prepared from skin and stratum corneum lipids by transmission electron microscopy
Micron, 38 (8), 777-81
DOI 10.1016/j.micron.2007.06.005, PubMed 17681473

Velentzas AD, Nezis IP, Stravopodis DJ, Papassideri IS, Margaritis LH (2007)
Apoptosis and autophagy function cooperatively for the efficacious execution of programmed nurse cell death during Drosophila virilis oogenesis
Autophagy, 3 (2), 130-2
DOI 10.4161/auto.3582, PubMed 17183224

Velentzas AD, Nezis IP, Stravopodis DJ, Papassideri IS, Margaritis LH (2007)
Stage-specific regulation of programmed cell death during oogenesis of the medfly Ceratitis capitata (Diptera, Tephritidae)
Int J Dev Biol, 51 (1), 57-66
DOI 10.1387/ijdb.062164av, PubMed 17183465

Panagopoulos DJ, Chavdoula ED, Nezis IP, Margaritis LH (2006)
Cell death induced by GSM 900-MHz and DCS 1800-MHz mobile telephony radiation
Mutat Res, 626 (1-2), 69-78
DOI 10.1016/j.mrgentox.2006.08.008, PubMed 17045516

Velentzas AD, Nezis IP, Stravopodis DJ, Papassideri IS, Margaritis LH (2006)
Mechanisms of programmed cell death during oogenesis in Drosophila virilis
Cell Tissue Res, 327 (2), 399-414
DOI 10.1007/s00441-006-0298-x, PubMed 17004067

Mpakou VE, Nezis IP, Stravopodis DJ, Margaritis LH, Papassideri IS (2006)
Programmed cell death of the ovarian nurse cells during oogenesis of the silkmoth Bombyx mori
Dev Growth Differ, 48 (7), 419-28
DOI 10.1111/j.1440-169X.2006.00878.x, PubMed 16961589

Nezis IP, Stravopodis DJ, Margaritis LH, Papassideri IS (2006)
Chromatin condensation of ovarian nurse and follicle cells is regulated independently from DNA fragmentation during Drosophila late oogenesis
Differentiation, 74 (6), 293-304
DOI 10.1111/j.1432-0436.2006.00076.x, PubMed 16831198

Nezis IP, Stravopodis DJ, Margaritis LH, Papassideri IS (2006)
Programmed cell death of follicular epithelium during the late developmental stages of oogenesis in the fruit flies Bactrocera oleae and Ceratitis capitata (Diptera, Tephritidae) is mediated by autophagy
Dev Growth Differ, 48 (3), 189-98
DOI 10.1111/j.1440-169X.2006.00856.x, PubMed 16573736

Nezis IP, Stravopodis DJ, Margaritis LH, Papassideri IS (2006)
Autophagy is required for the degeneration of the ovarian follicular epithelium in higher Diptera
Autophagy, 2 (4), 297-8
DOI 10.4161/auto.2858, PubMed 16921270

Nezis IP, Stravopodis DJ, Margaritis LH, Papassideri IS (2005)
Follicular atresia during Dacus oleae oogenesis
J Insect Physiol, 52 (3), 282-90
DOI 10.1016/j.jinsphys.2005.11.007, PubMed 16368106

Chondrogianni N, Tzavelas C, Pemberton AJ, Nezis IP, Rivett AJ, Gonos ES (2005)
Overexpression of proteasome beta5 assembled subunit increases the amount of proteasome and confers ameliorated response to oxidative stress and higher survival rates
J Biol Chem, 280 (12), 11840-50
DOI 10.1074/jbc.M413007200, PubMed 15661736

Nezis IP, Stravopodis DJ, Papassideri IS, Stergiopoulos C, Margaritis LH (2005)
Morphological irregularities and features of resistance to apoptosis in the dcp-1/pita double mutated egg chambers during Drosophila oogenesis
Cell Motil Cytoskeleton, 60 (1), 14-23
DOI 10.1002/cm.20043, PubMed 15547953

Nezis IP, Modes V, Mpakou V, Stravopodis DJ, Papassideri IS, Mammali I, Margaritis LH (2003)
Modes of programmed cell death during Ceratitis capitata oogenesis
Tissue Cell, 35 (2), 113-9
DOI 10.1016/s0040-8166(03)00010-7, PubMed 12747933

Sideratou Z, Foundis J, Tsiourvas D, Nezis IP, Papadimas G, Paleos CM (2002)
A Novel Dendrimeric "Glue" for Adhesion of Phosphatidyl Choline-Based Liposomes
Langmuir, 18 (13), 5036-5039
DOI 10.1021/la020150i, PubMed 28230373

Nezis IP, Stravopodis DJ, Papassideri I, Robert-Nicoud M, Margaritis LH (2002)
Dynamics of apoptosis in the ovarian follicle cells during the late stages of Drosophila oogenesis
Cell Tissue Res, 307 (3), 401-9
DOI 10.1007/s00441-001-0498-3, PubMed 11904777

Nezis IP, Stravopodis DJ, Papassideri I, Margaritis LH (2001)
Actin cytoskeleton reorganization of the apoptotic nurse cells during the late developmental stages of oogenesis in Dacus oleae
Cell Motil Cytoskeleton, 48 (3), 224-33
DOI 10.1002/1097-0169(200103)48:3<224::AID-CM1011>3.0.CO;2-O, PubMed 11223953

Nezis IP, Stravopodis DJ, Papassideri I, Robert-Nicoud M, Margaritis LH (2000)
Stage-specific apoptotic patterns during Drosophila oogenesis
Eur J Cell Biol, 79 (9), 610-20
DOI 10.1078/0171-9335-00088, PubMed 11043402

Xanthou G, Tapinos NI, Polihronis M, Nezis IP, Margaritis LH, Moutsopoulos HM (1999)
CD4 cytotoxic and dendritic cells in the immunopathologic lesion of Sjögren's syndrome
Clin Exp Immunol, 118 (1), 154-63
DOI 10.1046/j.1365-2249.1999.01037.x, PubMed 10540173

Review articles

Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, Abdellatif M, Abdoli A, Abel S, Abeliovich H, Abildgaard MH, Abudu YP, Acevedo-Arozena A, Adamopoulos IE, Adeli K, Adolph TE, Adornetto A, Aflaki E, Agam G, Agarwal A, Aggarwal BB, Agnello M, Agostinis P, Agrewala JN, Agrotis A, Aguilar PV, Ahmad ST, Ahmed ZM et al. (2021)
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)¹
Autophagy, 17 (1), 1-382
DOI 10.1080/15548627.2020.1797280, PubMed 33634751

Petridi S, Jacomin AC, Bhujabal Z, Johansen T, Nezis IP (2020)
Exploring selective autophagy in Drosophila: Methods to identify Atg8-interacting proteins
Methods Cell Biol, 165, 13-29
DOI 10.1016/bs.mcb.2020.10.008, PubMed 34311862

Gohel R, Kournoutis A, Petridi S, Nezis IP (2019)
Molecular mechanisms of selective autophagy in Drosophila
Int Rev Cell Mol Biol, 354, 63-105
DOI 10.1016/bs.ircmb.2019.08.003, PubMed 32475477

Jacomin AC, Gul L, Sudhakar P, Korcsmaros T, Nezis IP (2018)
What We Learned From Big Data for Autophagy Research
Front Cell Dev Biol, 6, 92
DOI 10.3389/fcell.2018.00092, PubMed 30175097

Tsapras P, Nezis IP (2017)
Caspase involvement in autophagy
Cell Death Differ, 24 (8), 1369-1379
DOI 10.1038/cdd.2017.43, PubMed 28574508

Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, Agnello M, Agostinis P, Aguilar PV, Aguirre-Ghiso J, Airoldi EM, Ait-Si-Ali S, Akematsu T, Akporiaye ET, Al-Rubeai M, Albaiceta GM et al. (2016)
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)
Autophagy, 12 (1), 1-222
DOI 10.1080/15548627.2015.1100356, PubMed 26799652

Mulakkal NC, Nagy P, Takats S, Tusco R, Juhász G, Nezis IP (2014)
Autophagy in Drosophila: from historical studies to current knowledge
Biomed Res Int, 2014, 273473
DOI 10.1155/2014/273473, PubMed 24949430

Klionsky DJ, Abdalla FC, Abeliovich H, Abraham RT, Acevedo-Arozena A, Adeli K, Agholme L, Agnello M, Agostinis P, Aguirre-Ghiso JA, Ahn HJ, Ait-Mohamed O, Ait-Si-Ali S, Akematsu T, Akira S, Al-Younes HM, Al-Zeer MA, Albert ML, Albin RL, Alegre-Abarrategui J, Aleo MF, Alirezaei M, Almasan A, Almonte-Becerril M, Amano A et al. (2012)
Guidelines for the use and interpretation of assays for monitoring autophagy
Autophagy, 8 (4), 445-544
DOI 10.4161/auto.19496, PubMed 22966490

Nezis IP, Stenmark H (2012)
p62 at the interface of autophagy, oxidative stress signaling, and cancer
Antioxid Redox Signal, 17 (5), 786-93
DOI 10.1089/ars.2011.4394, PubMed 22074114

Nezis IP, Sagona AP, Schink KO, Stenmark H (2010)
Divide and ProsPer: the emerging role of PtdIns3P in cytokinesis
Trends Cell Biol, 20 (11), 642-9
DOI 10.1016/j.tcb.2010.08.010, PubMed 20880709

Malagoli D, Abdalla FC, Cao Y, Feng Q, Fujisaki K, Gregorc A, Matsuo T, Nezis IP, Papassideri IS, Sass M, Silva-Zacarin EC, Tettamanti G, Umemiya-Shirafuji R (2010)
Autophagy and its physiological relevance in arthropods: current knowledge and perspectives
Autophagy, 6 (5), 575-88
DOI 10.4161/auto.6.5.11962, PubMed 20458176

Nezis IP, Papassideri I (2008)
Monitoring autophagy in insect eggs
Methods Enzymol, 451, 669-83
DOI 10.1016/S0076-6879(08)03237-0, PubMed 19185745