Publication list - Publika - Scientific publications from Oslo University Hospital

Publications by Torfinn Nome

26 publications found

Original articles

Sinclair-Waters M, Nome T, Wang J, Lien S, Kent MP, Sægrov H, Florø-Larsen B, Bolstad GH, Primmer CR, Barson NJ (2022)
Dissecting the loci underlying maturation timing in Atlantic salmon using haplotype and multi-SNP based association methods
Heredity (Edinb), 129 (6), 356-365
DOI 10.1038/s41437-022-00570-w, PubMed 36357776

Stenløkk K, Saitou M, Rud-Johansen L, Nome T, Moser M, Árnyasi M, Kent M, Barson NJ, Lien S (2022)
The emergence of supergenes from inversions in Atlantic salmon
Philos Trans R Soc Lond B Biol Sci, 377 (1856), 20210195
DOI 10.1098/rstb.2021.0195, PubMed 35694753

West AC, Mizoro Y, Wood SH, Ince LM, Iversen M, Jørgensen EH, Nome T, Sandve SR, Martin SAM, Loudon ASI, Hazlerigg DG (2021)
Immunologic Profiling of the Atlantic Salmon Gill by Single Nuclei Transcriptomics
Front Immunol, 12, 669889
DOI 10.3389/fimmu.2021.669889, PubMed 34017342

Bertolotti AC, Layer RM, Gundappa MK, Gallagher MD, Pehlivanoglu E, Nome T, Robledo D, Kent MP, Røsæg LL, Holen MM, Mulugeta TD, Ashton TJ, Hindar K, Sægrov H, Florø-Larsen B, Erkinaro J, Primmer CR, Bernatchez L, Martin SAM, Johnston IA, Sandve SR, Lien S, Macqueen DJ (2020)
The structural variation landscape in 492 Atlantic salmon genomes
Nat Commun, 11 (1), 5176
DOI 10.1038/s41467-020-18972-x, PubMed 33056985

Pearse DE, Barson NJ, Nome T, Gao G, Campbell MA, Abadía-Cardoso A, Anderson EC, Rundio DE, Williams TH, Naish KA, Moen T, Liu S, Kent M, Moser M, Minkley DR, Rondeau EB, Brieuc MSO, Sandve SR, Miller MR, Cedillo L, Baruch K, Hernandez AG, Ben-Zvi G, Shem-Tov D, Barad O et al. (2019)
Sex-dependent dominance maintains migration supergene in rainbow trout
Nat Ecol Evol, 3 (12), 1731-1742
DOI 10.1038/s41559-019-1044-6, PubMed 31768021

Mulugeta TD, Nome T, To TH, Gundappa MK, Macqueen DJ, Våge DI, Sandve SR, Hvidsten TR (2019)
SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes
BMC Genomics, 20 (1), 694
DOI 10.1186/s12864-019-6051-0, PubMed 31477007

Gao G, Nome T, Pearse DE, Moen T, Naish KA, Thorgaard GH, Lien S, Palti Y (2018)
A New Single Nucleotide Polymorphism Database for Rainbow Trout Generated Through Whole Genome Resequencing
Front Genet, 9, 147
DOI 10.3389/fgene.2018.00147, PubMed 29740479

Kijas J, McWilliam S, Naval Sanchez M, Kube P, King H, Evans B, Nome T, Lien S, Verbyla K (2018)
Evolution of Sex Determination Loci in Atlantic Salmon
Sci Rep, 8 (1), 5664
DOI 10.1038/s41598-018-23984-1, PubMed 29618750

Kirubakaran TG, Grove H, Kent MP, Sandve SR, Baranski M, Nome T, De Rosa MC, Righino B, Johansen T, Otterå H, Sonesson A, Lien SR, Andersen Ø (2018)
Erratum
Mol Ecol, 27 (6), 1520
DOI 10.1111/mec.14530, PubMed 29663587

Celestino R, Nome T, Pestana A, Hoff AM, Gonçalves AP, Pereira L, Cavadas B, Eloy C, Bjøro T, Sobrinho-Simões M, Skotheim RI, Soares P (2018)
CRABP1, C1QL1 and LCN2 are biomarkers of differentiated thyroid carcinoma, and predict extrathyroidal extension
BMC Cancer, 18 (1), 68
DOI 10.1186/s12885-017-3948-3, PubMed 29321030

Samy JKA, Mulugeta TD, Nome T, Sandve SR, Grammes F, Kent MP, Lien S, Våge DI (2017)
SalmoBase: an integrated molecular data resource for Salmonid species
BMC Genomics, 18 (1), 482
DOI 10.1186/s12864-017-3877-1, PubMed 28651544

Olsen HG, Knutsen TM, Kohler A, Svendsen M, Gidskehaug L, Grove H, Nome T, Sodeland M, Sundsaasen KK, Kent MP, Martens H, Lien S (2017)
Genome-wide association mapping for milk fat composition and fine mapping of a QTL for de novo synthesis of milk fatty acids on bovine chromosome 13
Genet Sel Evol, 49 (1), 20
DOI 10.1186/s12711-017-0294-5, PubMed 28193175

Olsen HG, Knutsen TM, Lewandowska-Sabat AM, Grove H, Nome T, Svendsen M, Arnyasi M, Sodeland M, Sundsaasen KK, Dahl SR, Heringstad B, Hansen HH, Olsaker I, Kent MP, Lien S (2016)
Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production
Genet Sel Evol, 48 (1), 79
DOI 10.1186/s12711-016-0257-2, PubMed 27760518

Kirubakaran TG, Grove H, Kent MP, Sandve SR, Baranski M, Nome T, De Rosa MC, Righino B, Johansen T, Otterå H, Sonesson A, Lien S, Andersen Ø (2016)
Two adjacent inversions maintain genomic differentiation between migratory and stationary ecotypes of Atlantic cod
Mol Ecol, 25 (10), 2130-43
DOI 10.1111/mec.13592, PubMed 26923504

Lien S, Koop BF, Sandve SR, Miller JR, Kent MP, Nome T, Hvidsten TR, Leong JS, Minkley DR, Zimin A, Grammes F, Grove H, Gjuvsland A, Walenz B, Hermansen RA, von Schalburg K, Rondeau EB, Di Genova A, Samy JK, Olav Vik J, Vigeland MD, Caler L, Grimholt U, Jentoft S, Våge DI et al. (2016)
The Atlantic salmon genome provides insights into rediploidization
Nature, 533 (7602), 200-5
DOI 10.1038/nature17164, PubMed 27088604

Lorenz S, Barøy T, Sun J, Nome T, Vodák D, Bryne JC, Håkelien AM, Fernandez-Cuesta L, Möhlendick B, Rieder H, Szuhai K, Zaikova O, Ahlquist TC, Thomassen GO, Skotheim RI, Lothe RA, Tarpey PS, Campbell P, Flanagan A, Myklebost O, Meza-Zepeda LA (2016)
Unscrambling the genomic chaos of osteosarcoma reveals extensive transcript fusion, recurrent rearrangements and frequent novel TP53 aberrations
Oncotarget, 7 (5), 5273-88
DOI 10.18632/oncotarget.6567, PubMed 26672768

Barson NJ, Aykanat T, Hindar K, Baranski M, Bolstad GH, Fiske P, Jacq C, Jensen AJ, Johnston SE, Karlsson S, Kent M, Moen T, Niemelä E, Nome T, Næsje TF, Orell P, Romakkaniemi A, Sægrov H, Urdal K, Erkinaro J, Lien S, Primmer CR (2015)
Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon
Nature, 528 (7582), 405-8
DOI 10.1038/nature16062, PubMed 26536110

Hoff AM, Johannessen B, Alagaratnam S, Zhao S, Nome T, Løvf M, Bakken AC, Hektoen M, Sveen A, Lothe RA, Skotheim RI (2015)
Novel RNA variants in colorectal cancers
Oncotarget, 6 (34), 36587-602
DOI 10.18632/oncotarget.5500, PubMed 26474385

Bruun J, Kolberg M, Ahlquist TC, Røyrvik EC, Nome T, Leithe E, Lind GE, Merok MA, Rognum TO, Bjørkøy G, Johansen T, Lindblom A, Sun XF, Svindland A, Liestøl K, Nesbakken A, Skotheim RI, Lothe RA (2015)
Regulator of Chromosome Condensation 2 Identifies High-Risk Patients within Both Major Phenotypes of Colorectal Cancer
Clin Cancer Res, 21 (16), 3759-70
DOI 10.1158/1078-0432.CCR-14-3294, PubMed 25910952

Løvf M, Nome T, Bruun J, Eknaes M, Bakken AC, Mpindi JP, Kilpinen S, Rognum TO, Nesbakken A, Kallioniemi O, Lothe RA, Skotheim RI (2014)
A novel transcript, VNN1-AB, as a biomarker for colorectal cancer
Int J Cancer, 135 (9), 2077-84
DOI 10.1002/ijc.28855, PubMed 24687856

Nome T, Hoff AM, Bakken AC, Rognum TO, Nesbakken A, Skotheim RI (2014)
High frequency of fusion transcripts involving TCF7L2 in colorectal cancer: novel fusion partner and splice variants
PLoS One, 9 (3), e91264
DOI 10.1371/journal.pone.0091264, PubMed 24608966

Nome T, Thomassen GO, Bruun J, Ahlquist T, Bakken AC, Hoff AM, Rognum T, Nesbakken A, Lorenz S, Sun J, Barros-Silva JD, Lind GE, Myklebost O, Teixeira MR, Meza-Zepeda LA, Lothe RA, Skotheim RI (2013)
Common fusion transcripts identified in colorectal cancer cell lines by high-throughput RNA sequencing
Transl Oncol, 6 (5), 546-53
DOI 10.1593/tlo.13457, PubMed 24151535

Nyquist KB, Panagopoulos I, Thorsen J, Haugom L, Gorunova L, Bjerkehagen B, Fosså A, Guriby M, Nome T, Lothe RA, Skotheim RI, Heim S, Micci F (2012)
Whole-transcriptome sequencing identifies novel IRF2BP2-CDX1 fusion gene brought about by translocation t(1;5)(q42;q32) in mesenchymal chondrosarcoma
PLoS One, 7 (11), e49705
DOI 10.1371/journal.pone.0049705, PubMed 23185413

Nilsen H, Olsen HG, Hayes B, Sehested E, Svendsen M, Nome T, Meuwissen T, Lien S (2009)
Casein haplotypes and their association with milk production traits in Norwegian Red cattle
Genet Sel Evol, 41 (1), 24
DOI 10.1186/1297-9686-41-24, PubMed 19284706