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Publications by Tor-Kristian Jenssen

26 publications found

Original articles

Eikvil L, Jenssen TK, Holden M (2015)
Multi-focus cluster labeling
J Biomed Inform, 55, 116-23
DOI 10.1016/j.jbi.2015.03.012, PubMed 25869415

Liu F, Kuo WP, Jenssen TK, Hovig E (2012)
Performance comparison of multiple microarray platforms for gene expression profiling
Methods Mol Biol, 802, 141-55
DOI 10.1007/978-1-61779-400-1_10, PubMed 22130879

Nakken S, Johansen M, Fillebeen J, Berge OP, Kirkerød H, Jenssen TK, Hovig E (2012)
CellLineMiner: a knowledge portal for human cell lines
Bioinformation, 8 (22), 1119-22
DOI 10.6026/97320630081119, PubMed 23251048

Liu F, Jenssen TK, Trimarchi J, Punzo C, Cepko CL, Ohno-Machado L, Hovig E, Kuo WP (2007)
Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates
BMC Genomics, 8, 153
DOI 10.1186/1471-2164-8-153, PubMed 17555589

Liu F, Tøstesen E, Sundet JK, Jenssen TK, Bock C, Jerstad GI, Thilly WG, Hovig E (2007)
The human genomic melting map
PLoS Comput Biol, 3 (5), e93
DOI 10.1371/journal.pcbi.0030093, PubMed 17511513

Kuo WP, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple ME, Maysuria M, Serikawa K, Lee SY, McCrann D, Kang J, Shearstone JR, Burke J, Park DJ, Wang X, Rector TL, Ricciardi-Castagnoli P, Perrin S, Choi S, Bumgarner R, Kim JH, Short GF, Freeman MW, Seed B et al. (2006)
A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies
Nat Biotechnol, 24 (7), 832-40
DOI 10.1038/nbt1217, PubMed 16823376

Trøen G, Nygaard V, Jenssen TK, Ikonomou IM, Tierens A, Matutes E, Gruszka-Westwood A, Catovsky D, Myklebost O, Lauritzsen G, Hovig E, Delabie J (2004)
Constitutive expression of the AP-1 transcription factors c-jun, junD, junB, and c-fos and the marginal zone B-cell transcription factor Notch2 in splenic marginal zone lymphoma
J Mol Diagn, 6 (4), 297-307
DOI 10.1016/S1525-1578(10)60525-9, PubMed 15507668

Liu F, Jenssen TK, Nygaard V, Sack J, Hovig E (2004)
FigSearch: a figure legend indexing and classification system
Bioinformatics, 20 (16), 2880-2
DOI 10.1093/bioinformatics/bth316, PubMed 15145804

Kuo WP, Whipple ME, Epstein JB, Jenssen TK, Santos GS, Ohno-Machado L, Sonis ST (2004)
Deciphering gene expression profiles generated from DNA microarrays and their applications in oral medicine
Oral Surg Oral Med Oral Pathol Oral Radiol Endod, 97 (5), 584-91
DOI 10.1016/j.tripleo.2003.11.016, PubMed 15153870

Tøstesen E, Liu F, Jenssen TK, Hovig E (2003)
Speed-up of DNA melting algorithm with complete nearest neighbor properties
Biopolymers, 70 (3), 364-76
DOI 10.1002/bip.10495, PubMed 14579309

Kuo WP, Whipple ME, Jenssen TK, Todd R, Epstein JB, Ohno-Machado L, Sonis ST, Park PJ (2003)
Microarrays and clinical dentistry
J Am Dent Assoc, 134 (4), 456-62
DOI 10.14219/jada.archive.2003.0195, PubMed 12733779

Jenssen TK, Kuo WP, Stokke T, Hovig E (2002)
Associations between gene expressions in breast cancer and patient survival
Hum Genet, 111 (4-5), 411-20
DOI 10.1007/s00439-002-0804-5, PubMed 12384785

Jenssen TK, Langaas M, Kuo WP, Smith-Sørensen B, Myklebost O, Hovig E (2002)
Analysis of repeatability in spotted cDNA microarrays
Nucleic Acids Res, 30 (14), 3235-44
DOI 10.1093/nar/gkf441, PubMed 12136105

Kuo WP, Jenssen TK, Butte AJ, Ohno-Machado L, Kohane IS (2002)
Analysis of matched mRNA measurements from two different microarray technologies
Bioinformatics, 18 (3), 405-12
DOI 10.1093/bioinformatics/18.3.405, PubMed 11934739

Kuo WP, Jenssen TK, Park PJ, Lingen MW, Hasina R, Ohno-Machado L (2002)
Gene expression levels in different stages of progression in oral squamous cell carcinoma
Proc AMIA Symp, 415-9
PubMed 12474876

Ohno-Machado L, Vinterbo S, Dreiseitl S, Jenssen TK, Kuo W (2002)
Comparing imperfect measurements with the Bland-Altman technique: application in gene expression analysis
Proc AMIA Symp, 572-6
PubMed 12463888

Jenssen TK, Laegreid A, Komorowski J, Hovig E (2001)
A literature network of human genes for high-throughput analysis of gene expression
Nat Genet, 28 (1), 21-8
DOI 10.1038/ng0501-21, PubMed 11326270

Komorowski J, Hvidsten TR, Jenssen TK, Tjeldvoll D, Hovig E, Laegreid A, Sandvik AK (2001)
[New knowledge derived from measurement of gene expression with the DNA microarray method]
Tidsskr Nor Laegeforen, 121 (10), 1229-32
PubMed 11402750

Jenssen TK, Vinterbo S (2000)
A set-covering approach to specific search for literature about human genes
Proc AMIA Symp, 384-8
PubMed 11079910

Komorowski J, Hvidsten TR, Jenssen TK, Tjeldvoll D, Hovig E, Sandvik AK, Laegreid A (2000)
Towards Knowledge Discovery from cDNA Microarray Gene Expression Data
Lect. Notes Comput. Sci., 1910, 470-475

Review articles

Kuo WP, Kim EY, Trimarchi J, Jenssen TK, Vinterbo SA, Ohno-Machado L (2004)
A primer on gene expression and microarrays for machine learning researchers
J Biomed Inform, 37 (4), 293-303
DOI 10.1016/j.jbi.2004.07.002, PubMed 15465482

Kuo WP, Whipple ME, Sonis ST, Ohno-Machado L, Jenssen TK (2002)
Gene expression profiling by DNA microarrays and its application to dental research
Oral Oncol, 38 (7), 650-6
DOI 10.1016/s1368-8375(02)00013-1, PubMed 12353490

Other articles

Jenssen TK, Hovig E (2005)
Gene-expression profiling in breast cancer
Lancet, 365 (9460), 634-5
DOI 10.1016/S0140-6736(05)17959-8, PubMed 15721457

Jenssen TK, Hovig E (2002)
The semantic web and biology
Drug Discov Today, 7 (19), 992
DOI 10.1016/s1359-6446(02)02458-3, PubMed 12546914

Books

Jenssen TK, Vinterbo S (2000)
A relational approach to defining document set relevance: an application in human genetics
In IDI-rapport, Norges teknisk-naturvitenskapelige universitet, Instituttfor datateknikk og informasjonsvitenskap, Trondheim, IDI-nr 7/00, 15 s.
BIBSYS 001487930

Theses

Jenssen TK (2002)
Bioinformatics methods for analysis of gene expression data
In IDI-rapport, Norges teknisk-naturvitenskapelige universitet, Instituttfor datateknikk og informasjonsvitenskap, Trondheim, 2002:8, 1 b. (flere pag.)
BIBSYS 021555109, ISBN 82-471-5460-9