Publication list - Publika - Scientific publications from Oslo University Hospital

Publications by Sharmini Alagaratnam

20 publications found

Original articles

Hallock H, Marshall SE, 't Hoen PAC, Nygård JF, Hoorne B, Fox C, Alagaratnam S (2021)
Federated Networks for Distributed Analysis of Health Data
Front Public Health, 9, 712569
DOI 10.3389/fpubh.2021.712569, PubMed 34660512

Berg KCG, Brunsell TH, Sveen A, Alagaratnam S, Bjørnslett M, Hektoen M, Brudvik KW, Røsok BI, Bjørnbeth BA, Nesbakken A, Lothe RA (2021)
Genomic and prognostic heterogeneity among RAS/BRAF^V600E /TP53 co-mutated resectable colorectal liver metastases
Mol Oncol, 15 (4), 830-845
DOI 10.1002/1878-0261.12885, PubMed 33325154

Hoff AM, Kraggerud SM, Alagaratnam S, Berg KCG, Johannessen B, Høland M, Nilsen G, Lingjærde OC, Andrews PW, Lothe RA, Skotheim RI (2020)
Frequent copy number gains of SLC2A3 and ETV1 in testicular embryonal carcinomas
Endocr Relat Cancer, 27 (9), 457-468
DOI 10.1530/ERC-20-0064, PubMed 32580154

Berg KCG, Sveen A, Høland M, Alagaratnam S, Berg M, Danielsen SA, Nesbakken A, Søreide K, Lothe RA (2019)
Gene expression profiles of CMS2-epithelial/canonical colorectal cancers are largely driven by DNA copy number gains
Oncogene, 38 (33), 6109-6122
DOI 10.1038/s41388-019-0868-5, PubMed 31308487

Sveen A, Løes IM, Alagaratnam S, Nilsen G, Høland M, Lingjærde OC, Sorbye H, Berg KC, Horn A, Angelsen JH, Knappskog S, Lønning PE, Lothe RA (2016)
Intra-patient Inter-metastatic Genetic Heterogeneity in Colorectal Cancer as a Key Determinant of Survival after Curative Liver Resection
PLoS Genet, 12 (7), e1006225
DOI 10.1371/journal.pgen.1006225, PubMed 27472274

Hoff AM, Alagaratnam S, Zhao S, Bruun J, Andrews PW, Lothe RA, Skotheim RI (2015)
Identification of Novel Fusion Genes in Testicular Germ Cell Tumors
Cancer Res, 76 (1), 108-16
DOI 10.1158/0008-5472.CAN-15-1790, PubMed 26659575

Hoff AM, Johannessen B, Alagaratnam S, Zhao S, Nome T, Løvf M, Bakken AC, Hektoen M, Sveen A, Lothe RA, Skotheim RI (2015)
Novel RNA variants in colorectal cancers
Oncotarget, 6 (34), 36587-602
DOI 10.18632/oncotarget.5500, PubMed 26474385

Avery S, Hirst AJ, Baker D, Lim CY, Alagaratnam S, Skotheim RI, Lothe RA, Pera MF, Colman A, Robson P, Andrews PW, Knowles BB (2013)
BCL-XL mediates the strong selective advantage of a 20q11.21 amplification commonly found in human embryonic stem cell cultures
Stem Cell Reports, 1 (5), 379-86
DOI 10.1016/j.stemcr.2013.10.005, PubMed 24286026

Alagaratnam S, Harrison N, Bakken AC, Hoff AM, Jones M, Sveen A, Moore HD, Andrews PW, Lothe RA, Skotheim RI (2013)
Transforming pluripotency: an exon-level study of malignancy-specific transcripts in human embryonal carcinoma and embryonic stem cells
Stem Cells Dev, 22 (7), 1136-46
DOI 10.1089/scd.2012.0369, PubMed 23137282

Vishna D Nadarajah, Bart JA Mertens, Hans Dalebout, Marco R Bladergroen, Alagaratnam S, Penny Garrood, Kate Bushby, Volker Straub, Andre M Deelder, Johan T den Dunnen, Gert-Jan B van Ommen, Peter AC 't Hoen, Yuri EM van der Burgt (2012)
Serum peptide profiles of Duchenne Muscular Dystrophy (DMD) patients evaluated by data handling strategies for high resolution content
J Proteomics Bioinform, 5, 4
DOI 10.4172/jpb.1000219, PublikaID 162

Alagaratnam S, Lind GE, Kraggerud SM, Lothe RA, Skotheim RI (2011)
The testicular germ cell tumour transcriptome
Int J Androl, 34 (4 Pt 2), e133-50; discussion e150-1
DOI 10.1111/j.1365-2605.2011.01169.x, PubMed 21651573

Alagaratnam S, Meeuwenoord NJ, Navarro JA, Hervás M, De la Rosa MA, Hoffmann M, Einsle O, Ubbink M, Canters GW (2011)
Probing the reactivity of different forms of azurin by flavin photoreduction
FEBS J, 278 (9), 1506-21
DOI 10.1111/j.1742-4658.2011.08067.x, PubMed 21352498

Martínez-Junza V, Rizzi AC, Alagaratnam S, Bell TD, Canters GW, Braslavsky SE (2008)
Flavodoxin relaxes in microseconds upon excitation of the flavin chromophore: detection of a UV-visible silent intermediate by laser photocalorimetry
Photochem Photobiol, 85 (1), 107-10
DOI 10.1111/j.1751-1097.2008.00402.x, PubMed 18643903

Alagaratnam S, Mertens BJ, Dalebout JC, Deelder AM, van Ommen GJ, den Dunnen JT, 't Hoen PA (2008)
Serum protein profiling in mice: identification of Factor XIIIa as a potential biomarker for muscular dystrophy
Proteomics, 8 (8), 1552-63
DOI 10.1002/pmic.200700857, PubMed 18409166

Schmauder R, Alagaratnam S, Chan C, Schmidt T, Canters GW, Aartsma TJ (2005)
Sensitive detection of the redox state of copper proteins using fluorescence
J Biol Inorg Chem, 10 (6), 683-7
DOI 10.1007/s00775-005-0020-6, PubMed 16158291

Alagaratnam S, van Pouderoyen G, Pijning T, Dijkstra BW, Cavazzini D, Rossi GL, Van Dongen WM, van Mierlo CP, van Berkel WJ, Canters GW (2005)
A crystallographic study of Cys69Ala flavodoxin II from Azotobacter vinelandii: structural determinants of redox potential
Protein Sci, 14 (9), 2284-95
DOI 10.1110/ps.051582605, PubMed 16131657

Michelina G. Finiguerra, Irene M.C. van Amsterdam, Alagaratnam S, Marcellus Ubbink, Martina Huber (2003)
Anisotropic spin label mobilities in azurin from 95 GHz electron paramagnetic resonance spectroscopy
Chemical Physics Letters, 382, 528-533
DOI 10.1016/j.cplett.2003.10.112, PublikaID 161

Review articles

Vallevik VB, Babic A, Marshall SE, Elvatun S, Brøgger HMB, Alagaratnam S, Edwin B, Veeraragavan NR, Befring AK, Nygård JF (2024)
Can I trust my fake data - A comprehensive quality assessment framework for synthetic tabular data in healthcare
Int J Med Inform, 185, 105413
DOI 10.1016/j.ijmedinf.2024.105413, PubMed 38493547

Kraggerud SM, Hoei-Hansen CE, Alagaratnam S, Skotheim RI, Abeler VM, Rajpert-De Meyts E, Lothe RA (2013)
Molecular characteristics of malignant ovarian germ cell tumors and comparison with testicular counterparts: implications for pathogenesis
Endocr Rev, 34 (3), 339-76
DOI 10.1210/er.2012-1045, PubMed 23575763