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Publications by Fang Liu

12 publications found

Original articles

Trachtenberg AJ, Robert JH, Abdalla AE, Fraser A, He SY, Lacy JN, Rivas-Morello C, Truong A, Hardiman G, Ohno-Machado L, Liu F, Hovig E, Kuo WP (2012)
A primer on the current state of microarray technologies
Methods Mol Biol, 802, 3-17
DOI 10.1007/978-1-61779-400-1_1, PubMed 22130870

Liu F, Kuo WP, Jenssen TK, Hovig E (2012)
Performance comparison of multiple microarray platforms for gene expression profiling
Methods Mol Biol, 802, 141-55
DOI 10.1007/978-1-61779-400-1_10, PubMed 22130879

Tøstesen E, Sandve GK, Liu F, Hovig E (2008)
Segmentation of DNA sequences into twostate regions and melting fork regions
J Phys Condens Matter, 21 (3), 034109
DOI 10.1088/0953-8984/21/3/034109, PubMed 21817254

Nygaard V, Liu F, Holden M, Kuo WP, Trimarchi J, Ohno-Machado L, Cepko CL, Frigessi A, Glad IK, Wiel MA, Hovig E, Lyng H (2008)
Validation of oligoarrays for quantitative exploration of the transcriptome
BMC Genomics, 9, 258
DOI 10.1186/1471-2164-9-258, PubMed 18513391

Liu F, Jenssen TK, Trimarchi J, Punzo C, Cepko CL, Ohno-Machado L, Hovig E, Kuo WP (2007)
Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates
BMC Genomics, 8, 153
DOI 10.1186/1471-2164-8-153, PubMed 17555589

Liu F, Tøstesen E, Sundet JK, Jenssen TK, Bock C, Jerstad GI, Thilly WG, Hovig E (2007)
The human genomic melting map
PLoS Comput Biol, 3 (5), e93
DOI 10.1371/journal.pcbi.0030093, PubMed 17511513

Kuo WP, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple ME, Maysuria M, Serikawa K, Lee SY, McCrann D, Kang J, Shearstone JR, Burke J, Park DJ, Wang X, Rector TL, Ricciardi-Castagnoli P, Perrin S, Choi S, Bumgarner R, Kim JH, Short GF, Freeman MW, Seed B et al. (2006)
A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies
Nat Biotechnol, 24 (7), 832-40
DOI 10.1038/nbt1217, PubMed 16823376

Wang X, Wang M, Amarzguioui M, Liu F, Fodstad Ø, Prydz H (2004)
Downregulation of tissue factor by RNA interference in human melanoma LOX-L cells reduces pulmonary metastasis in nude mice
Int J Cancer, 112 (6), 994-1002
DOI 10.1002/ijc.20527, PubMed 15386437

Liu F, Jenssen TK, Nygaard V, Sack J, Hovig E (2004)
FigSearch: a figure legend indexing and classification system
Bioinformatics, 20 (16), 2880-2
DOI 10.1093/bioinformatics/bth316, PubMed 15145804

Liu F, Jenssen TK, Nygaard V, Sack J, Hovig E (2004)
FigSearch: Using maximum entropy classifier to categorize biological figures
2004 IEEE COMPUTATIONAL SYSTEMS BIOINFORMATICS CONFERENCE, PROCEEDINGS, 476-477

Tøstesen E, Liu F, Jenssen TK, Hovig E (2003)
Speed-up of DNA melting algorithm with complete nearest neighbor properties
Biopolymers, 70 (3), 364-76
DOI 10.1002/bip.10495, PubMed 14579309

Nygaard V, Løland A, Holden M, Langaas M, Rue H, Liu F, Myklebost O, Fodstad Ø, Hovig E, Smith-Sørensen B (2003)
Effects of mRNA amplification on gene expression ratios in cDNA experiments estimated by analysis of variance
BMC Genomics, 4 (1), 11
DOI 10.1186/1471-2164-4-11, PubMed 12659661