Publication list - Publika - Scientific publications from Oslo University Hospital

Publications by Anna Bergamaschi

41 publications found

Original articles

Butcher TA, Phillips NW, Chiu CC, Wei CC, Ho SZ, Chen YC, Fröjdh E, Baruffaldi F, Carulla M, Zhang J, Bergamaschi A, Vaz CAF, Kleibert A, Finizio S, Yang JC, Huang SW, Raabe J (2024)
Ptychographic Nanoscale Imaging of the Magnetoelectric Coupling in Freestanding BiFeO₃
Adv Mater, e2311157 (in press)
DOI 10.1002/adma.202311157, PubMed 38402421

Dullin C, Albers J, Tagat A, Lorenzon A, D'Amico L, Chiriotti S, Sodini N, Dreossi D, Alves F, Bergamaschi A, Tromba G (2024)
In vivo low-dose phase-contrast CT for quantification of functional and anatomical alterations in lungs of an experimental allergic airway disease mouse model
Front Med (Lausanne), 11, 1338846
DOI 10.3389/fmed.2024.1338846, PubMed 38410752

Carulla M, Barten R, Baruffaldi F, Bergamaschi A, Borghi G, Boscardin M, Brückner M, Butcher TA, Centis Vignali M, Dinapoli R, Ebner S, Ficorella F, Fröjdh E, Greiffenberg D, Hammad Ali O, Hasanaj S, Heymes J, Hinger V, King T, Kozlowski P, Lopez Cuenca C, Mezza D, Moustakas K, Mozzanica A, Paternoster G et al. (2024)
Quantum Efficiency Measurement and Modeling of Silicon Sensors Optimized for Soft X-ray Detection
Sensors (Basel), 24 (3)
DOI 10.3390/s24030942, PubMed 38339659

Haan D, Bergamaschi A, Friedl V, Guler GD, Ning Y, Reggiardo R, Kesling M, Collins M, Gibb B, Hazen K, Bates S, Antoine M, Fraire C, Lopez V, Malta R, Nabiyouni M, Nguyen A, Phillips T, Riviere M, Leighton A, Ellison C, McCarthy E, Scott A, Gigliotti L, Nilson E et al. (2023)
Epigenomic Blood-Based Early Detection of Pancreatic Cancer Employing Cell-Free DNA
Clin Gastroenterol Hepatol, 21 (7), 1802-1809.e6
DOI 10.1016/j.cgh.2023.03.016, PubMed 36967102

Sjöström M, Zhao SG, Levy S, Zhang M, Ning Y, Shrestha R, Lundberg A, Herberts C, Foye A, Aggarwal R, Hua JT, Li H, Bergamaschi A, Maurice-Dror C, Maheshwari A, Chen S, Ng SWS, Ye W, Petricca J, Fraser M, Chesner L, Perry MD, Moreno-Rodriguez T, Chen WS, Alumkal JJ et al. (2022)
The 5-Hydroxymethylcytosine Landscape of Prostate Cancer
Cancer Res, 82 (21), 3888-3902
DOI 10.1158/0008-5472.CAN-22-1123, PubMed 36251389

Nakauchi Y, Azizi A, Thomas D, Corces MR, Reinisch A, Sharma R, Cruz Hernandez D, Köhnke T, Karigane D, Fan A, Martinez-Krams D, Stafford M, Kaur S, Dutta R, Phan P, Ediriwickrema A, McCarthy E, Ning Y, Phillips T, Ellison CK, Guler GD, Bergamaschi A, Ku CJ, Levy S, Majeti R (2022)
The Cell Type-Specific 5hmC Landscape and Dynamics of Healthy Human Hematopoiesis and TET2-Mutant Preleukemia
Blood Cancer Discov, 3 (4), 346-367
DOI 10.1158/2643-3230.BCD-21-0143, PubMed 35532363

Greiffenberg D, Andrä M, Barten R, Bergamaschi A, Brückner M, Busca P, Chiriotti S, Chsherbakov I, Dinapoli R, Fajardo P, Fröjdh E, Hasanaj S, Kozlowski P, Lopez Cuenca C, Lozinskaya A, Meyer M, Mezza D, Mozzanica A, Redford S, Ruat M, Ruder C, Schmitt B, Thattil D, Tinti G, Tolbanov O et al. (2021)
Characterization of Chromium Compensated GaAs Sensors with the Charge-Integrating JUNGFRAU Readout Chip by Means of a Highly Collimated Pencil Beam
Sensors (Basel), 21 (4)
DOI 10.3390/s21041550, PubMed 33672262

Cui XL, Nie J, Ku J, Dougherty U, West-Szymanski DC, Collin F, Ellison CK, Sieh L, Ning Y, Deng Z, Zhao CWT, Bergamaschi A, Pekow J, Wei J, Beadell AV, Zhang Z, Sharma G, Talwar R, Arensdorf P, Karpus J, Goel A, Bissonnette M, Zhang W, Levy S, He C (2020)
A human tissue map of 5-hydroxymethylcytosines exhibits tissue specificity through gene and enhancer modulation
Nat Commun, 11 (1), 6161
DOI 10.1038/s41467-020-20001-w, PubMed 33268789

Guler GD, Ning Y, Ku CJ, Phillips T, McCarthy E, Ellison CK, Bergamaschi A, Collin F, Lloyd P, Scott A, Antoine M, Wang W, Chau K, Ashworth A, Quake SR, Levy S (2020)
Detection of early stage pancreatic cancer using 5-hydroxymethylcytosine signatures in circulating cell free DNA
Nat Commun, 11 (1), 5270
DOI 10.1038/s41467-020-18965-w, PubMed 33077732

Koybasi O, Zhang JG, Kok A, Summanwar A, Povoli M, Breivik L, Bergamaschi A, Schmitt B (2020)
Edgeless silicon sensors fabricated without support wafer
Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip., 953, 163176
DOI 10.1016/j.nima.2019.163176

Andrä M, Zhang J, Bergamaschi A, Barten R, Borca C, Borghi G, Boscardin M, Busca P, Brückner M, Cartiglia N, Chiriotti S, Dalla Betta GF, Dinapoli R, Fajardo P, Ferrero M, Ficorella F, Fröjdh E, Greiffenberg D, Huthwelker T, Lopez-Cuenca C, Meyer M, Mezza D, Mozzanica A, Pancheri L, Paternoster G et al. (2019)
Development of low-energy X-ray detectors using LGAD sensors
J Synchrotron Radiat, 26 (Pt 4), 1226-1237
DOI 10.1107/S1600577519005393, PubMed 31274448

Wakonig K, Diaz A, Bonnin A, Stampanoni M, Bergamaschi A, Ihli J, Guizar-Sicairos M, Menzel A (2019)
X-ray Fourier ptychography
Sci Adv, 5 (2), eaav0282
DOI 10.1126/sciadv.aav0282, PubMed 30746489

Dullin C, Albers J, Tromba G, Andrä M, Ramilli M, Bergamaschi A (2018)
MÖNCH detector enables fast and low-dose free-propagation phase-contrast computed tomography of in situ mouse lungs
J Synchrotron Radiat, 25 (Pt 2), 565-569
DOI 10.1107/S160057751701668X, PubMed 29488938

Cartier S, Kagias M, Bergamaschi A, Wang Z, Dinapoli R, Mozzanica A, Ramilli M, Schmitt B, Brückner M, Fröjdh E, Greiffenberg D, Mayilyan D, Mezza D, Redford S, Ruder C, Schädler L, Shi X, Thattil D, Tinti G, Zhang J, Stampanoni M (2016)
Micrometer-resolution imaging using MÖNCH: towards G₂-less grating interferometry
J Synchrotron Radiat, 23 (Pt 6), 1462-1473
DOI 10.1107/S1600577516014788, PubMed 27787252

Bosch A, Li Z, Bergamaschi A, Ellis H, Toska E, Prat A, Tao JJ, Spratt DE, Viola-Villegas NT, Castel P, Minuesa G, Morse N, Rodón J, Ibrahim Y, Cortes J, Perez-Garcia J, Galvan P, Grueso J, Guzman M, Katzenellenbogen JA, Kharas M, Lewis JS, Dickler M, Serra V, Rosen N et al. (2015)
PI3K inhibition results in enhanced estrogen receptor function and dependence in hormone receptor-positive breast cancer
Sci Transl Med, 7 (283), 283ra51
DOI 10.1126/scitranslmed.aaa4442, PubMed 25877889

Bergamaschi A, Madak-Erdogan Z, Kim YJ, Choi YL, Lu H, Katzenellenbogen BS (2014)
The forkhead transcription factor FOXM1 promotes endocrine resistance and invasiveness in estrogen receptor-positive breast cancer by expansion of stem-like cancer cells
Breast Cancer Res, 16 (5), 436
DOI 10.1186/s13058-014-0436-4, PubMed 25213081

Holton SE, Bergamaschi A, Katzenellenbogen BS, Bhargava R (2014)
Integration of molecular profiling and chemical imaging to elucidate fibroblast-microenvironment impact on cancer cell phenotype and endocrine resistance in breast cancer
PLoS One, 9 (5), e96878
DOI 10.1371/journal.pone.0096878, PubMed 24816718

Tao JJ, Castel P, Radosevic-Robin N, Elkabets M, Auricchio N, Aceto N, Weitsman G, Barber P, Vojnovic B, Ellis H, Morse N, Viola-Villegas NT, Bosch A, Juric D, Hazra S, Singh S, Kim P, Bergamaschi A, Maheswaran S, Ng T, Penault-Llorca F, Lewis JS, Carey LA, Perou CM, Baselga J et al. (2014)
Antagonism of EGFR and HER3 enhances the response to inhibitors of the PI3K-Akt pathway in triple-negative breast cancer
Sci Signal, 7 (318), ra29
DOI 10.1126/scisignal.2005125, PubMed 24667376

Mir M, Bergamaschi A, Katzenellenbogen BS, Popescu G (2014)
Highly sensitive quantitative imaging for monitoring single cancer cell growth kinetics and drug response
PLoS One, 9 (2), e89000
DOI 10.1371/journal.pone.0089000, PubMed 24558461

Bergamaschi A, Frasor J, Borgen K, Stanculescu A, Johnson P, Rowland K, Wiley EL, Katzenellenbogen BS (2012)
14-3-3ζ as a predictor of early time to recurrence and distant metastasis in hormone receptor-positive and -negative breast cancers
Breast Cancer Res Treat, 137 (3), 689-96
DOI 10.1007/s10549-012-2390-0, PubMed 23271328

Bergamaschi A, Dinapoli R, Greiffenberg D, Henrich B, Johnson I, Mozzanica A, Radicci V, Schmitt B, Shi X, Stoppani L (2011)
Time-over-threshold readout to enhance the high flux capabilities of single-photon-counting detectors
J Synchrotron Radiat, 18 (Pt 6), 923-9
DOI 10.1107/S0909049511034480, PubMed 21997919

Bergamaschi A, Christensen BL, Katzenellenbogen BS (2011)
Reversal of endocrine resistance in breast cancer: interrelationships among 14-3-3ζ, FOXM1, and a gene signature associated with mitosis
Breast Cancer Res, 13 (3), R70
DOI 10.1186/bcr2913, PubMed 21707964

Colin L, Vandenhoudt N, de Walque S, Van Driessche B, Bergamaschi A, Martinelli V, Cherrier T, Vanhulle C, Guiguen A, David A, Burny A, Herbein G, Pancino G, Rohr O, Van Lint C (2011)
The AP-1 binding sites located in the pol gene intragenic regulatory region of HIV-1 are important for viral replication
PLoS One, 6 (4), e19084
DOI 10.1371/journal.pone.0019084, PubMed 21526160

Bergamaschi A, David A, Pancino G (2011)
[Complex interactions between HIV and macrophages]
Virologie (Montrouge), 15 (2), 87-99
DOI 10.1684/vir.2011.15784, PubMed 36151634

Stanculescu A, Bembinster LA, Borgen K, Bergamaschi A, Wiley E, Frasor J (2010)
Estrogen promotes breast cancer cell survival in an inhibitor of apoptosis (IAP)-dependent manner
Horm Cancer, 1 (3), 127-35
DOI 10.1007/s12672-010-0018-6, PubMed 21152357

Peng J, Zhu J, Bergamaschi A, Han W, Noh DY, Pollack JR, Wang P (2010)
Regularized Multivariate Regression for Identifying Master Predictors with Application to Integrative Genomics Study of Breast Cancer
Ann Appl Stat, 4 (1), 53-77
DOI 10.1214/09-AOAS271SUPP, PubMed 24489618

Bergamaschi A, David A, Le Rouzic E, Nisole S, Barré-Sinoussi F, Pancino G (2009)
The CDK inhibitor p21Cip1/WAF1 is induced by FcgammaR activation and restricts the replication of human immunodeficiency virus type 1 and related primate lentiviruses in human macrophages
J Virol, 83 (23), 12253-65
DOI 10.1128/JVI.01395-09, PubMed 19759136

Bergamaschi A, Hjortland GO, Triulzi T, Sørlie T, Johnsen H, Ree AH, Russnes HG, Tronnes S, Maelandsmo GM, Fodstad O, Borresen-Dale AL, Engebraaten O (2009)
Molecular profiling and characterization of luminal-like and basal-like in vivo breast cancer xenograft models
Mol Oncol, 3 (5-6), 469-82
DOI 10.1016/j.molonc.2009.07.003, PubMed 19713161

Bergamaschi A, Kim YH, Kwei KA, La Choi Y, Bocanegra M, Langerød A, Han W, Noh DY, Huntsman DG, Jeffrey SS, Børresen-Dale AL, Pollack JR (2008)
CAMK1D amplification implicated in epithelial-mesenchymal transition in basal-like breast cancer
Mol Oncol, 2 (4), 327-39
DOI 10.1016/j.molonc.2008.09.004, PubMed 19383354

Casalini P, Iorio MV, Berno V, Bergamaschi A, Børresen Dale AL, Gasparini P, Orlandi R, Casati B, Tagliabue E, Ménard S (2007)
Relationship between p53 and p27 expression following HER2 signaling
Breast, 16 (6), 597-605
DOI 10.1016/j.breast.2007.05.007, PubMed 17604627

Schulerud H, Thielemann J, Kirkhus T, Kaspersen K, Ostby JM, Metaxas MG, Royle GJ, Griffiths J, Cook E, Esbrand C, Pani S, Venanzi C, van der Stelt PF, Li G, Turchetta R, Fant A, Theodoridis S, Georgiou H, Hall G, Noy M, Jones J, Leaver J, Triantis F, Asimidis A, Manthos N et al. (2007)
Adaptive image content-based exposure control for scanning applications in radiography
LECT NOTES COMPUT SC, 4678, 543-552

Bergamaschi A, Kim YH, Wang P, Sørlie T, Hernandez-Boussard T, Lonning PE, Tibshirani R, Børresen-Dale AL, Pollack JR (2006)
Distinct patterns of DNA copy number alteration are associated with different clinicopathological features and gene-expression subtypes of breast cancer
Genes Chromosomes Cancer, 45 (11), 1033-40
DOI 10.1002/gcc.20366, PubMed 16897746

Baumbusch LO, Myhre S, Langerød A, Bergamaschi A, Geisler SB, Lønning PE, Deppert W, Dornreiter I, Børresen-Dale AL (2006)
Expression of full-length p53 and its isoform Deltap53 in breast carcinomas in relation to mutation status and clinical parameters
Mol Cancer, 5, 47
DOI 10.1186/1476-4598-5-47, PubMed 17054774

Griffiths JA, Metaxas MG, Royle GJ, Venanzi C, Esbrand C, van der Stelt PF, Verheij H, Li G, Turchetta R, Fant A, Gasiorek P, Theodoridis S, Georgiou H, Cavouras D, Hall G, Noy M, Jones J, Leaver J, Machin D, Greenwood S, Khaleeq M, Schulerud H, Ostby JM, Triantis F, Asimidis A et al. (2006)
A Multi-Element Detector System for Intelligent Imaging: I-ImaS
IEEE NUCL SCI CONF R, 2554-2558
DOI 10.1109/NSSMIC.2006.354430

Kringen P, Bergamaschi A, Due EU, Wang Y, Tagliabue E, Nesland JM, Nehman A, Tönisson N, Børresen-Dale AL (2005)
Evaluation of arrayed primer extension for TP53 mutation detection in breast and ovarian carcinomas
Biotechniques, 39 (5), 755-61
DOI 10.2144/000112000, PubMed 16312222

Pani S, Longo R, Dreossi D, Montanari F, Olivo A, Arfelli F, Bergamaschi A, Poropat P, Rigon L, Zanconati F, Dalla Palma L, Castelli E (2004)
Breast tomography with synchrotron radiation: preliminary results
Phys Med Biol, 49 (9), 1739-54
DOI 10.1088/0031-9155/49/9/011, PubMed 15152928

Manfredini R, Tenedini E, Siena M, Tagliafico E, Montanari M, Grande A, Zanocco-Marani T, Poligani C, Zini R, Gemelli C, Bergamaschi A, Vignudelli T, De Rienzo F, De Benedetti PG, Menziani MC, Ferrari S (2003)
Development of an IL-6 antagonist peptide that induces apoptosis in 7TD1 cells
Peptides, 24 (8), 1207-20
DOI 10.1016/j.peptides.2003.06.005, PubMed 14612193

Iervolino A, Santilli G, Trotta R, Guerzoni C, Cesi V, Bergamaschi A, Gambacorti-Passerini C, Calabretta B, Perrotti D (2002)
hnRNP A1 nucleocytoplasmic shuttling activity is required for normal myelopoiesis and BCR/ABL leukemogenesis
Mol Cell Biol, 22 (7), 2255-66
DOI 10.1128/MCB.22.7.2255-2266.2002, PubMed 11884611