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Publications by Hege Vangstein Aamot

47 publications found

Original articles

Werner G, Aamot HV, Couto N (2024)
Antimicrobial susceptibility prediction from genomes: a dream come true?
Trends Microbiol, 32 (4), 317-318
DOI 10.1016/j.tim.2024.02.012, PubMed 38433028

Hesselberg Løvestad A, Stosic MS, Costanzi JM, Christiansen IK, Aamot HV, Ambur OH, Rounge TB (2023)
TaME-seq2: tagmentation-assisted multiplex PCR enrichment sequencing for viral genomic profiling
Virol J, 20 (1), 44
DOI 10.1186/s12985-023-02002-5, PubMed 36890572

Aamot HV, Claas ECJ, Couto N, Westh H, Greub G, Rossen JWA (2022)
Next-generation sequencing in routine clinical microbiology and infectious diseases: an ESGMD-ESGEM ESCMID postgraduate course
New Microbes New Infect, 49-50, 101046
DOI 10.1016/j.nmni.2022.101046, PubMed 36444272

Steinig E, Aglua I, Duchene S, Meehan MT, Yoannes M, Firth C, Jaworski J, Drekore J, Urakoko B, Poka H, Wurr C, Ebos E, Nangen D, Müller E, Mulvey P, Jackson C, Blomfeldt A, Aamot HV, Laman M, Manning L, Earls M, Coleman DC, Greenhill A, Ford R, Stegger M et al. (2022)
Phylodynamic signatures in the emergence of community-associated MRSA
Proc Natl Acad Sci U S A, 119 (45), e2204993119
DOI 10.1073/pnas.2204993119, PubMed 36322765

Berggreen H, Løvestad AH, Helmersen K, Jørgensen SB, Aamot HV (2022)
Lessons learned: use of WGS in real-time investigation of suspected intrahospital SARS-CoV-2 outbreaks
J Hosp Infect, 131, 81-88
DOI 10.1016/j.jhin.2022.10.003, PubMed 36404573

Wegner F, Roloff T, Huber M, Cordey S, Ramette A, Gerth Y, Bertelli C, Stange M, Seth-Smith HMB, Mari A, Leuzinger K, Cerutti L, Harshman K, Xenarios I, Le Mercier P, Bittel P, Neuenschwander S, Opota O, Fuchs J, Panning M, Michel C, Hallin M, Demuyser T, De Mendonca R, Savelkoul P et al. (2021)
External Quality Assessment of SARS-CoV-2 Sequencing: an ESGMD-SSM Pilot Trial across 15 European Laboratories
J Clin Microbiol, 60 (1), e0169821
DOI 10.1128/JCM.01698-21, PubMed 34757834

Enger H, Larssen KW, Damås ES, Aamot HV, Blomfeldt A, Elstrøm P, Ås CG (2021)
A tale of two STs: molecular and clinical epidemiology of MRSA t304 in Norway 2008-2016
Eur J Clin Microbiol Infect Dis, 41 (2), 209-218
DOI 10.1007/s10096-021-04353-9, PubMed 34687359

Ferreira FA, Helmersen K, Visnovska T, Jørgensen SB, Aamot HV (2021)
Rapid nanopore-based DNA sequencing protocol of antibiotic-resistant bacteria for use in surveillance and outbreak investigation
Microb Genom, 7 (4)
DOI 10.1099/mgen.0.000557, PubMed 33885360

Noone JC, Ferreira FA, Aamot HV (2021)
Culture-Independent Genotyping, Virulence and Antimicrobial Resistance Gene Identification of Staphylococcus aureus from Orthopaedic Implant-Associated Infections
Microorganisms, 9 (4)
DOI 10.3390/microorganisms9040707, PubMed 33808095

Løvestad AH, Jørgensen SB, Handal N, Ambur OH, Aamot HV (2021)
Investigation of intra-hospital SARS-CoV-2 transmission using nanopore whole-genome sequencing
J Hosp Infect, 111, 107-116
DOI 10.1016/j.jhin.2021.02.022, PubMed 33647375

Blomfeldt A, Jørgensen SB, Helmersen K, Eskonsipo PKJ, Aamot HV (2021)
Is increased Staphylococcus aureus colonization during military service caused by specific genotypes? Molecular examination of long-term carriage in a prospective cohort study
APMIS, 129 (4), 170-177
DOI 10.1111/apm.13106, PubMed 33336455

Noone JC, Helmersen K, Leegaard TM, Skråmm I, Aamot HV (2021)
Rapid Diagnostics of Orthopaedic-Implant-Associated Infections Using Nanopore Shotgun Metagenomic Sequencing on Tissue Biopsies
Microorganisms, 9 (1)
DOI 10.3390/microorganisms9010097, PubMed 33406597

Aamot HV, Noone JC, Skråmm I, Leegaard TM (2020)
Are conventional microbiological diagnostics sufficiently expedient in the era of rapid diagnostics? Evaluation of conventional microbiological diagnostics of orthopedic implant-associated infections (OIAI)
Acta Orthop, 92 (2), 204-207
DOI 10.1080/17453674.2020.1844499, PubMed 33167775

Noone JC, Stegger M, Lilje B, Stavem K, Helmersen K, Skråmm I, Aamot HV (2020)
Molecular characteristics of Staphylococcus aureus associated prosthetic joint infections after hip fractures treated with hemiarthroplasty: a retrospective genome-wide association study
Sci Rep, 10 (1), 16553
DOI 10.1038/s41598-020-73736-3, PubMed 33024212

Helmersen K, Aamot HV (2020)
DNA extraction of microbial DNA directly from infected tissue: an optimized protocol for use in nanopore sequencing
Sci Rep, 10 (1), 2985
DOI 10.1038/s41598-020-59957-6, PubMed 32076089

Michalik S, Sundaramoorthy N, Murr A, Depke M, Völker U, Bröker BM, Aamot HV, Schmidt F (2020)
Early-Stage Staphylococcus aureus Bloodstream Infection Causes Changes in the Concentrations of Lipoproteins and Acute-Phase Proteins and Is Associated with Low Antibody Titers against Bacterial Virulence Factors
mSystems, 5 (1)
DOI 10.1128/mSystems.00632-19, PubMed 31964768

Steinig EJ, Duchene S, Robinson DA, Monecke S, Yokoyama M, Laabei M, Slickers P, Andersson P, Williamson D, Kearns A, Goering RV, Dickson E, Ehricht R, Ip M, O'Sullivan MVN, Coombs GW, Petersen A, Brennan G, Shore AC, Coleman DC, Pantosti A, de Lencastre H, Westh H, Kobayashi N, Heffernan H et al. (2019)
Evolution and Global Transmission of a Multidrug-Resistant, Community-Associated Methicillin-Resistant Staphylococcus aureus Lineage from the Indian Subcontinent
mBio, 10 (6)
DOI 10.1128/mBio.01105-19, PubMed 31772058

Aamot HV, Johnsen BO, Skråmm I (2019)
Rapid diagnostics of orthopedic implant-associated infections using Unyvero ITI implant and tissue infection application is not optimal for Staphylococcus species identification
BMC Res Notes, 12 (1), 725
DOI 10.1186/s13104-019-4755-5, PubMed 31694724

Fladberg ØA, Jørgensen SB, Aamot HV (2017)
Genotypic characterization of gentamicin and cephalosporin resistant Escherichia coli isolates from blood cultures in a Norwegian university hospital 2011-2015
Antimicrob Resist Infect Control, 6, 121
DOI 10.1186/s13756-017-0280-2, PubMed 29214016

Aamot HV, Eskonsipo PKJ, Jørgensen SB, Blomfeldt A (2017)
Staphylococcus aureus colonization during military service: a prospective cohort study
Clin Microbiol Infect, 24 (7), 744-748
DOI 10.1016/j.cmi.2017.10.012, PubMed 29074158

Smeland TE, Müller F, Blomfeldt A, Stavem K, Aamot HV (2017)
No associations established between single nucleotide polymorphisms in human Toll-like receptor 2 and Toll-interacting protein and Staphylococcus aureus bloodstream infections
APMIS, 125 (10), 927-932
DOI 10.1111/apm.12734, PubMed 28736863

Blomfeldt A, Larssen KW, Moghen A, Gabrielsen C, Elstrøm P, Aamot HV, Jørgensen SB (2017)
Emerging multidrug-resistant Bengal Bay clone ST772-MRSA-V in Norway: molecular epidemiology 2004-2014
Eur J Clin Microbiol Infect Dis, 36 (10), 1911-1921
DOI 10.1007/s10096-017-3014-8, PubMed 28555401

Blomfeldt A, Larssen KW, Moghen A, Haugum K, Steen TW, Jørgensen SB, Aamot HV (2016)
Bengal Bay clone ST772-MRSA-V outbreak: conserved clone causes investigation challenges
J Hosp Infect, 95 (3), 253-258
DOI 10.1016/j.jhin.2016.12.006, PubMed 28131643

Blomfeldt A, Aamot HV, Eskesen AN, Monecke S, White RA, Leegaard TM, Bjørnholt JV (2016)
DNA microarray analysis of Staphylococcus aureus causing bloodstream infection: bacterial genes associated with mortality?
Eur J Clin Microbiol Infect Dis, 35 (8), 1285-95
DOI 10.1007/s10096-016-2663-3, PubMed 27177754

Blomfeldt A, Eskesen AN, Aamot HV, Leegaard TM, Bjørnholt JV (2016)
Population-based epidemiology of Staphylococcus aureus bloodstream infection: clonal complex 30 genotype is associated with mortality
Eur J Clin Microbiol Infect Dis, 35 (5), 803-13
DOI 10.1007/s10096-016-2601-4, PubMed 26873380

Blomfeldt A, Hasan AA, Aamot HV (2016)
Can MLVA Differentiate among Endemic-Like MRSA Isolates with Identical Spa-Type in a Low-Prevalence Region?
PLoS One, 11 (2), e0148772
DOI 10.1371/journal.pone.0148772, PubMed 26859765

Aamot HV, Stavem K, Skråmm I (2015)
No change in the distribution of types and antibiotic resistance in clinical Staphylococcus aureus isolates from orthopaedic patients during a period of 12 years
Eur J Clin Microbiol Infect Dis, 34 (9), 1833-7
DOI 10.1007/s10096-015-2420-z, PubMed 26076750

Monecke S, Aamot HV, Stieber B, Ruppelt A, Ehricht R (2013)
Characterization of PVL-positive MRSA from Norway
APMIS, 122 (7), 580-4
DOI 10.1111/apm.12181, PubMed 24106794

Fiskvik I, Aamot HV, Delabie J, Smeland EB, Stokke T, Heim S, Holte H (2013)
Karyotyping of diffuse large B-cell lymphomas: loss of 17p is associated with poor patient outcome
Eur J Haematol, 91 (4), 332-8
DOI 10.1111/ejh.12171, PubMed 23859481

Blomfeldt A, Aamot HV, Eskesen AN, Müller F, Monecke S (2012)
Molecular characterization of methicillin-sensitive Staphylococcus aureus isolates from bacteremic patients in a Norwegian University Hospital
J Clin Microbiol, 51 (1), 345-7
DOI 10.1128/JCM.02571-12, PubMed 23135934

Aamot HV, Blomfeldt A, Eskesen AN (2012)
Genotyping of 353 Staphylococcus aureus bloodstream isolates collected between 2004 and 2009 at a Norwegian university hospital and potential associations with clinical parameters
J Clin Microbiol, 50 (9), 3111-4
DOI 10.1128/JCM.01352-12, PubMed 22785198

Aamot HV, Blomfeldt A, Skråmm I, Müller F, Monecke S (2012)
Molecular characterisation of methicillin-sensitive Staphylococcus aureus from deep surgical site infections in orthopaedic patients
Eur J Clin Microbiol Infect Dis, 31 (8), 1999-2004
DOI 10.1007/s10096-011-1532-3, PubMed 22258425

Aamot H, Gigic B, Abel U, Karapanagiotou-Schenkel I (2010)
Continuous monitoring of toxicity in clinical trials - simulating the risk of stopping prematurely
Int J Clin Pharmacol Ther, 48 (7), 476-7
DOI 10.5414/cpp48476, PubMed 20557850

Eide MB, Liestøl K, Lingjaerde OC, Hystad ME, Kresse SH, Meza-Zepeda L, Myklebost O, Trøen G, Aamot HV, Holte H, Smeland EB, Delabie J (2010)
Genomic alterations reveal potential for higher grade transformation in follicular lymphoma and confirm parallel evolution of tumor cell clones
Blood, 116 (9), 1489-97
DOI 10.1182/blood-2010-03-272278, PubMed 20505157

Ikonomou IM, Aamot HV, Heim S, Fosså A, Delabie J (2007)
Granulomatous slack skin with a translocation t(3;9)(q12;p24)
Am J Surg Pathol, 31 (5), 803-6
DOI 10.1097/PAS.0b013e31803071a4, PubMed 17460466

Aamot HV, Torlakovic EE, Eide MB, Holte H, Heim S (2007)
Non-Hodgkin lymphoma with t(14;18): clonal evolution patterns and cytogenetic-pathologic-clinical correlations
J Cancer Res Clin Oncol, 133 (7), 455-70
DOI 10.1007/s00432-006-0188-3, PubMed 17235551

Torlakovic EE, Aamot HV, Heim S (2006)
A marginal zone phenotype in follicular lymphoma with t(14;18) is associated with secondary cytogenetic aberrations typical of marginal zone lymphoma
J Pathol, 209 (2), 258-64
DOI 10.1002/path.1981, PubMed 16583359

Ikonomou IM, Tierens A, Troen G, Aamot HV, Heim S, Lauritzsen GF, Vålerhaugen H, Delabie J (2006)
Peripheral T-cell lymphoma with involvement of the expanded mantle zone
Virchows Arch, 449 (1), 78-87
DOI 10.1007/s00428-005-0123-z, PubMed 16633785

Aamot HV, Tjønnfjord GE, Delabie J, Heim S (2006)
Molecular cytogenetic analysis of leukemic mantle cell lymphoma with a cryptic t(11;14)
Cancer Genet Cytogenet, 165 (2), 172-5
DOI 10.1016/j.cancergencyto.2005.08.012, PubMed 16527613

Aamot HV, Bjørnslett M, Delabie J, Heim S (2005)
t(14;22)(q32;q11) in non-Hodgkin lymphoma and myeloid leukaemia: molecular cytogenetic investigations
Br J Haematol, 130 (6), 845-51
DOI 10.1111/j.1365-2141.2005.05688.x, PubMed 16156854

Aamot HV, Micci F, Holte H, Delabie J, Heim S (2005)
G-banding and molecular cytogenetic analyses of marginal zone lymphoma
Br J Haematol, 130 (6), 890-901
DOI 10.1111/j.1365-2141.2005.05706.x, PubMed 16156859

Aamot H, Micci F, Holte H, Delabie J, Heim S (2002)
M-FISH cytogenetic analysis of non-Hodgkin lymphomas with t(14;18)(q32;q21) and add(1)(p36) as a secondary abnormality shows that the extra material often comes from chromosome arm 17q
Leuk Lymphoma, 43 (5), 1051-6
DOI 10.1080/10428190290021551, PubMed 12148885

Other articles

Aamot HV, Blomfeldt A, Eskesen AN (2016)
Correction for Aamot et al., Genotyping of 353 Staphylococcus aureus Bloodstream Isolates Collected between 2004 and 2009 at a Norwegian University Hospital and Potential Associations with Clinical Parameters
J Clin Microbiol, 54 (9), 2403
DOI 10.1128/JCM.01434-16, PubMed 27578158

Blomfeldt A, Aamot HV, Eskesen AN, Müller F, Monecke S (2016)
Correction for Blomfeldt et al., Molecular Characterization of Methicillin-Sensitive Staphylococcus aureus Isolates from Bacteremic Patients in a Norwegian University Hospital
J Clin Microbiol, 54 (9), 2404
DOI 10.1128/JCM.01436-16, PubMed 27578159

Thorsen J, Aamot HV, Roberto R, Tjønnfjord GE, Micci F, Heim S (2012)
Myelodysplastic syndrome with a t(2;11)(p21;q23-24) and translocation breakpoint close to miR-125b-1
Cancer Genet, 205 (10), 528-32
DOI 10.1016/j.cancergen.2012.06.003, PubMed 22944560

Theses

Aamot HV (2006)
Molecular cytogenetic analyses of primary and secondary chromosome abnormalities in B-cell non-Hodgkin lymphoma
In Series of dissertations submitted to the Faculty of Medicine, University of Oslo, Unipub, Oslo, no. 446, 1 b. (flere pag.)
BIBSYS 061912603, ISBN 82-8072-408-7

Aamot HV (2002)
Characterization by G-banding and M-FISH of add(1)(p36) in nonHodgkin lymphomas with t(14;18) as the primary chromosomeaberration
H. Aamot, Trondheim, 79 bl.
BIBSYS 030686326