Publication list - Publika - Scientific publications from Oslo University Hospital

Publications by Torsten Waldminghaus

31 publications found

Original articles

Sperlea T, Muth L, Martin R, Weigel C, Waldminghaus T, Heider D (2020)
gammaBOriS: Identification and Taxonomic Classification of Origins of Replication in Gammaproteobacteria using Motif-based Machine Learning
Sci Rep, 10 (1), 6727
DOI 10.1038/s41598-020-63424-7, PubMed 32317695

Kemter FS, Schallopp N, Sperlea T, Serrania J, Sobetzko P, Fritz G, Waldminghaus T (2019)
Stringent response leads to continued cell division and a temporal restart of DNA replication after initial shutdown in Vibrio cholerae
Mol Microbiol, 111 (6), 1617-1637
DOI 10.1111/mmi.14241, PubMed 30873684

Bruhn M, Schindler D, Kemter FS, Wiley MR, Chase K, Koroleva GI, Palacios G, Sozhamannan S, Waldminghaus T (2018)
Functionality of Two Origins of Replication in Vibrio cholerae Strains With a Single Chromosome
Front Microbiol, 9, 2932
DOI 10.3389/fmicb.2018.02932, PubMed 30559732

Kemter FS, Messerschmidt SJ, Schallopp N, Sobetzko P, Lang E, Bunk B, Spröer C, Teschler JK, Yildiz FH, Overmann J, Waldminghaus T (2018)
Synchronous termination of replication of the two chromosomes is an evolutionary selected feature in Vibrionaceae
PLoS Genet, 14 (3), e1007251
DOI 10.1371/journal.pgen.1007251, PubMed 29505558

Zumkeller C, Schindler D, Waldminghaus T (2018)
Modular Assembly of Synthetic Secondary Chromosomes
Methods Mol Biol, 1837, 71-94
DOI 10.1007/978-1-4939-8675-0_5, PubMed 30109606

Schallopp N, Milbredt S, Sperlea T, Kemter FS, Bruhn M, Schindler D, Waldminghaus T (2017)
Establishing a System for Testing Replication Inhibition of the Vibrio cholerae Secondary Chromosome in Escherichia coli
Antibiotics (Basel), 7 (1)
DOI 10.3390/antibiotics7010003, PubMed 29295515

Flåtten I, Helgesen E, Pedersen IB, Waldminghaus T, Rothe C, Taipale R, Johnsen L, Skarstad K (2017)
Phenotypes of dnaX_E145A Mutant Cells Indicate that the Escherichia coli Clamp Loader Has a Role in the Restart of Stalled Replication Forks
J Bacteriol, 199 (24)
DOI 10.1128/JB.00412-17, PubMed 28947673

Milbredt S, Waldminghaus T (2017)
BiFCROS: A Low-Background Fluorescence Repressor Operator System for Labeling of Genomic Loci
G3 (Bethesda), 7 (6), 1969-1977
DOI 10.1534/g3.117.040782, PubMed 28450375

Xie G, Johnson SL, Davenport KW, Rajavel M, Waldminghaus T, Detter JC, Chain PS, Sozhamannan S (2017)
Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual Vibrio cholerae Strains with a Single Chromosome
Int J Genomics, 2017, 8724304
DOI 10.1155/2017/8724304, PubMed 28951866

Messerschmidt SJ, Schindler D, Zumkeller CM, Kemter FS, Schallopp N, Waldminghaus T (2016)
Optimization and Characterization of the Synthetic Secondary Chromosome synVicII in Escherichia coli
Front Bioeng Biotechnol, 4, 96
DOI 10.3389/fbioe.2016.00096, PubMed 28066763

Milbredt S, Farmani N, Sobetzko P, Waldminghaus T (2016)
DNA Replication in Engineered Escherichia coli Genomes with Extra Replication Origins
ACS Synth Biol, 5 (10), 1167-1176
DOI 10.1021/acssynbio.6b00064, PubMed 27268399

Sobetzko P, Jelonek L, Strickert M, Han W, Goesmann A, Waldminghaus T (2016)
DistAMo: A Web-Based Tool to Characterize DNA-Motif Distribution on Bacterial Chromosomes
Front Microbiol, 7, 283
DOI 10.3389/fmicb.2016.00283, PubMed 27014208

Waldminghaus T, Weigel C, Skarstad K (2012)
Replication fork movement and methylation govern SeqA binding to the Escherichia coli chromosome
Nucleic Acids Res, 40 (12), 5465-76
DOI 10.1093/nar/gks187, PubMed 22373925

Stokke C, Waldminghaus T, Skarstad K (2010)
Replication patterns and organization of replication forks in Vibrio cholerae
Microbiology (Reading), 157 (Pt 3), 695-708
DOI 10.1099/mic.0.045112-0, PubMed 21163839

Johnsen L, Flåtten I, Morigen, Dalhus B, Bjørås M, Waldminghaus T, Skarstad K (2010)
The G157C mutation in the Escherichia coli sliding clamp specifically affects initiation of replication
Mol Microbiol, 79 (2), 433-46
DOI 10.1111/j.1365-2958.2010.07453.x, PubMed 21219462

Gaubig LC, Waldminghaus T, Narberhaus F (2010)
Multiple layers of control govern expression of the Escherichia coli ibpAB heat-shock operon
Microbiology (Reading), 157 (Pt 1), 66-76
DOI 10.1099/mic.0.043802-0, PubMed 20864473

Waldminghaus T, Skarstad K (2010)
ChIP on Chip: surprising results are often artifacts
BMC Genomics, 11, 414
DOI 10.1186/1471-2164-11-414, PubMed 20602746

Waldminghaus T, Gaubig LC, Klinkert B, Narberhaus F (2009)
The Escherichia coli ibpA thermometer is comprised of stable and unstable structural elements
RNA Biol, 6 (4), 455-63
DOI 10.4161/rna.6.4.9014, PubMed 19535917

Waldminghaus T, Kortmann J, Gesing S, Narberhaus F (2008)
Generation of synthetic RNA-based thermosensors
Biol Chem, 389 (10), 1319-26
DOI 10.1515/BC.2008.150, PubMed 18713019

Waldminghaus T, Gaubig LC, Narberhaus F (2007)
Genome-wide bioinformatic prediction and experimental evaluation of potential RNA thermometers
Mol Genet Genomics, 278 (5), 555-64
DOI 10.1007/s00438-007-0272-7, PubMed 17647020

Waldminghaus T, Heidrich N, Brantl S, Narberhaus F (2007)
FourU: a novel type of RNA thermometer in Salmonella
Mol Microbiol, 65 (2), 413-24
DOI 10.1111/j.1365-2958.2007.05794.x, PubMed 17630972

Waldminghaus T, Fippinger A, Alfsmann J, Narberhaus F (2005)
RNA thermometers are common in alpha- and gamma-proteobacteria
Biol Chem, 386 (12), 1279-86
DOI 10.1515/BC.2005.145, PubMed 16336122

Gerth U, Kirstein J, Mostertz J, Waldminghaus T, Miethke M, Kock H, Hecker M (2004)
Fine-tuning in regulation of Clp protein content in Bacillus subtilis
J Bacteriol, 186 (1), 179-91
DOI 10.1128/JB.186.1.179-191.2004, PubMed 14679237

Review articles

Jütte M, Abdighahroudi MS, Waldminghaus T, Lackner S, V Lutze H (2023)
Bacterial inactivation processes in water disinfection - mechanistic aspects of primary and secondary oxidants - A critical review
Water Res, 231, 119626
DOI 10.1016/j.watres.2023.119626, PubMed 36709565

Hoff J, Daniel B, Stukenberg D, Thuronyi BW, Waldminghaus T, Fritz G (2020)
Vibrio natriegens: an ultrafast-growing marine bacterium as emerging synthetic biology chassis
Environ Microbiol, 22 (10), 4394-4408
DOI 10.1111/1462-2920.15128, PubMed 32537803

Sozhamannan S, Waldminghaus T (2020)
Exception to the exception rule: synthetic and naturally occurring single chromosome Vibrio cholerae
Environ Microbiol, 22 (10), 4123-4132
DOI 10.1111/1462-2920.15002, PubMed 32237026

Waldminghaus T, Skarstad K (2009)
The Escherichia coli SeqA protein
Plasmid, 61 (3), 141-50
DOI 10.1016/j.plasmid.2009.02.004, PubMed 19254745

Narberhaus F, Waldminghaus T, Chowdhury S (2006)
RNA thermometers
FEMS Microbiol Rev, 30 (1), 3-16
DOI 10.1111/j.1574-6976.2005.004.x, PubMed 16438677