Publication list - Publika - Scientific publications from Oslo University Hospital

Publications by Karin Lagesen

41 publications found

Original articles

Gulla S, Colquhoun DJ, Olsen AB, Spilsberg B, Lagesen K, Åkesson CP, Strøm S, Manji F, Birkbeck TH, Nilsen HK (2023)
Phylogeography and host specificity of Pasteurellaceae pathogenic to sea-farmed fish in the north-east Atlantic
Front Microbiol, 14, 1236290
DOI 10.3389/fmicb.2023.1236290, PubMed 37808299

Mo SS, Fiskebeck EZ, Slettemeås JS, Lagesen K, Nilsson O, Naseer U, Jørgensen SB, Thorsteinsdottir TR, Sunde M (2023)
Escherichia coli multilocus sequence type 38 from humans and broiler production represent distinct monophyletic groups
Front Microbiol, 14, 1173287
DOI 10.3389/fmicb.2023.1173287, PubMed 37266008

Spilsberg B, Nilsen HK, Gulla S, Lagesen K, Olsen AB, Colquhoun DJ (2022)
Draft Genome Sequences of 23 Tenacibaculum Isolates from Farmed Norwegian Lumpfish, Cyclopterus lumpus
Microbiol Resour Announc, 11 (4), e0124921
DOI 10.1128/mra.01249-21, PubMed 35289652

Haverkamp THA, Kaspersen H, Øines Ø, Spilsberg B, Telke AA, Lagesen K, Slettemeås JS, Mo SS, Jørgensen HJ, Sekse C (2022)
Closed Genome Sequences of Providencia alcalifaciens Isolates from Dogs
Microbiol Resour Announc, 11 (2), e0095521
DOI 10.1128/mra.00955-21, PubMed 35175129

Spilsberg B, Nilsen HK, Tavornpanich S, Gulla S, Jansen MD, Lagesen K, Colquhoun DJ, Olsen AB (2022)
Tenacibaculosis in Norwegian Atlantic salmon (Salmo salar) cage-farmed in cold sea water is primarily associated with Tenacibaculum finnmarkense genomovar finnmarkense
J Fish Dis, 45 (4), 523-534
DOI 10.1111/jfd.13577, PubMed 35001372

Jørgensen HJ, Valheim M, Sekse C, Bergsjø BA, Wisløff H, Nørstebø SF, Skancke E, Lagesen K, Haaland AH, Rodriguez-Campos S, Sjurseth SK, Hofshagen M, Jarp J, Tronerud OH, Johannessen GS, Heggelund M, Rygg S, Christensen E, Boye M, Gjerset B, Sandvik M, Soltvedt EM, Wolff C (2021)
An Official Outbreak Investigation of Acute Haemorrhagic Diarrhoea in Dogs in Norway Points to Providencia alcalifaciens as a Likely Cause
Animals (Basel), 11 (11)
DOI 10.3390/ani11113201, PubMed 34827932

Filter M, Buschhardt T, Dórea F, Lopez de Abechuco E, Günther T, Sundermann EM, Gethmann J, Dups-Bergmann J, Lagesen K, Ellis-Iversen J (2021)
One Health Surveillance Codex: promoting the adoption of One Health solutions within and across European countries
One Health, 12, 100233
DOI 10.1016/j.onehlt.2021.100233, PubMed 33786360

Olsen AB, Spilsberg B, Nilsen HK, Lagesen K, Gulla S, Avendaño-Herrera R, Irgang R, Duchaud E, Colquhoun DJ (2020)
Tenacibaculum piscium sp. nov., isolated from skin ulcers of sea-farmed fish, and description of Tenacibaculum finnmarkense sp. nov. with subdivision into genomovars finnmarkense and ulcerans
Int J Syst Evol Microbiol, 70 (12), 6079-6090
DOI 10.1099/ijsem.0.004501, PubMed 33079030

Kaspersen H, Fiskebeck EZ, Sekse C, Slettemeås JS, Urdahl AM, Norström M, Lagesen K, Simm R (2020)
Comparative Genome Analyses of Wild Type- and Quinolone Resistant Escherichia coli Indicate Dissemination of QREC in the Norwegian Broiler Breeding Pyramid
Front Microbiol, 11, 938
DOI 10.3389/fmicb.2020.00938, PubMed 32508776

Kaspersen H, Sekse C, Zeyl Fiskebeck E, Slettemeås JS, Simm R, Norström M, Urdahl AM, Lagesen K (2020)
Dissemination of Quinolone-Resistant Escherichia coli in the Norwegian Broiler and Pig Production Chains and Possible Persistence in the Broiler Production Environment
Appl Environ Microbiol, 86 (7)
DOI 10.1128/AEM.02769-19, PubMed 31953334

Mable BK, Brysting AK, Jorgensen MH, Carbonell AKZ, Kiefer C, Ruiz-Duarte P, Lagesen K, Koch MA (2018)
Adding Complexity to Complexity: Gene Family Evolution in Polyploids
Front. Ecol. Evol., 6, 114
DOI 10.3389/fevo.2018.00114

Gulla S, Barnes AC, Welch TJ, Romalde JL, Ryder D, Ormsby MJ, Carson J, Lagesen K, Verner-Jeffreys DW, Davies RL, Colquhoun DJ (2018)
Multilocus Variable-Number Tandem-Repeat Analysis of Yersinia ruckeri Confirms the Existence of Host Specificity, Geographic Endemism, and Anthropogenic Dissemination of Virulent Clones
Appl Environ Microbiol, 84 (16)
DOI 10.1128/AEM.00730-18, PubMed 29884756

Kaspersen H, Urdahl AM, Simm R, Slettemeås JS, Lagesen K, Norström M (2018)
Occurrence of quinolone resistant E. coli originating from different animal species in Norway
Vet Microbiol, 217, 25-31
DOI 10.1016/j.vetmic.2018.02.022, PubMed 29615252

Khelik K, Lagesen K, Sandve GK, Rognes T, Nederbragt AJ (2017)
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences
BMC Bioinformatics, 18 (1), 338
DOI 10.1186/s12859-017-1748-z, PubMed 28701187

Siddiqui H, Lagesen K, Nederbragt AJ, Eri LM, Jeansson SL, Jakobsen KS (2014)
Pathogens in Urine from a Female Patient with Overactive Bladder Syndrome Detected by Culture-independent High Throughput Sequencing: A Case Report
Open Microbiol J, 8, 148-53
DOI 10.2174/1874285801408010148, PubMed 25685246

Xiao X, Sogge H, Lagesen K, Tooming-Klunderud A, Jakobsen KS, Rohrlack T (2014)
Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment
PLoS One, 9 (8), e106510
DOI 10.1371/journal.pone.0106510, PubMed 25171164

Booth JA, Thomassen GO, Rowe AD, Weel-Sneve R, Lagesen K, Kristiansen KI, Bjørås M, Rognes T, Lindvall JM (2013)
Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response
Sci Rep, 3, 3053
DOI 10.1038/srep03053, PubMed 24157950

Tooming-Klunderud A, Sogge H, Rounge TB, Nederbragt AJ, Lagesen K, Glöckner G, Hayes PK, Rohrlack T, Jakobsen KS (2013)
From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains
Appl Environ Microbiol, 79 (21), 6803-12
DOI 10.1128/AEM.01455-13, PubMed 23995927

de Muinck EJ, Lagesen K, Afset JE, Didelot X, Rønningen KS, Rudi K, Stenseth NC, Trosvik P (2013)
Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche
BMC Genomics, 14, 81
DOI 10.1186/1471-2164-14-81, PubMed 23384204

Vesth T, Lagesen K, Acar Ö, Ussery D (2013)
CMG-biotools, a free workbench for basic comparative microbial genomics
PLoS One, 8 (4), e60120
DOI 10.1371/journal.pone.0060120, PubMed 23577086

Jorgensen MH, Lagesen K, Mable BK, Brysting AK (2012)
Using high-throughput sequencing to investigate the evolution of self-incompatibility genes in the Brassicaceae: strategies and challenges
Plant Ecol. Divers., 5 (4), 473-484
DOI 10.1080/17550874.2012.748098

Siddiqui H, Lagesen K, Nederbragt AJ, Jeansson SL, Jakobsen KS (2012)
Alterations of microbiota in urine from women with interstitial cystitis
BMC Microbiol, 12, 205
DOI 10.1186/1471-2180-12-205, PubMed 22974186

Snipen L, Wassenaar TM, Altermann E, Olson J, Kathariou S, Lagesen K, Takamiya M, Knøchel S, Ussery DW, Meinersmann RJ (2012)
Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli
Microb Inform Exp, 2 (1), 8
DOI 10.1186/2042-5783-2-8, PubMed 22929701

Siddiqui H, Nederbragt AJ, Lagesen K, Jeansson SL, Jakobsen KS (2011)
Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons
BMC Microbiol, 11, 244
DOI 10.1186/1471-2180-11-244, PubMed 22047020

Star B, Nederbragt AJ, Jentoft S, Grimholt U, Malmstrøm M, Gregers TF, Rounge TB, Paulsen J, Solbakken MH, Sharma A, Wetten OF, Lanzén A, Winer R, Knight J, Vogel JH, Aken B, Andersen O, Lagesen K, Tooming-Klunderud A, Edvardsen RB, Tina KG, Espelund M, Nepal C, Previti C, Karlsen BO et al. (2011)
The genome sequence of Atlantic cod reveals a unique immune system
Nature, 477 (7363), 207-10
DOI 10.1038/nature10342, PubMed 21832995

Thomassen GO, Weel-Sneve R, Rowe AD, Booth JA, Lindvall JM, Lagesen K, Kristiansen KI, Bjørås M, Rognes T (2010)
Tiling array analysis of UV treated Escherichia coli predicts novel differentially expressed small peptides
PLoS One, 5 (12), e15356
DOI 10.1371/journal.pone.0015356, PubMed 21203457

Friis C, Wassenaar TM, Javed MA, Snipen L, Lagesen K, Hallin PF, Newell DG, Toszeghy M, Ridley A, Manning G, Ussery DW (2010)
Genomic characterization of Campylobacter jejuni strain M1
PLoS One, 5 (8), e12253
DOI 10.1371/journal.pone.0012253, PubMed 20865039

Bohlin J, Snipen L, Cloeckaert A, Lagesen K, Ussery D, Kristoffersen AB, Godfroid J (2010)
Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods
BMC Evol Biol, 10, 249
DOI 10.1186/1471-2148-10-249, PubMed 20707916

Bohlin J, Snipen L, Hardy SP, Kristoffersen AB, Lagesen K, Dønsvik T, Skjerve E, Ussery DW (2010)
Analysis of intra-genomic GC content homogeneity within prokaryotes
BMC Genomics, 11, 464
DOI 10.1186/1471-2164-11-464, PubMed 20691090

Thomassen GO, Rowe AD, Lagesen K, Lindvall JM, Rognes T (2009)
Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays
PLoS One, 4 (6), e5943
DOI 10.1371/journal.pone.0005943, PubMed 19536279

Ussery DW, Kiil K, Lagesen K, Sicheritz-Pontén T, Bohlin J, Wassenaar TM (2009)
The genus burkholderia: analysis of 56 genomic sequences
Genome Dyn, 6, 140-157
DOI 10.1159/000235768, PubMed 19696499

Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW (2007)
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
Nucleic Acids Res, 35 (9), 3100-8
DOI 10.1093/nar/gkm160, PubMed 17452365

Davidsen T, Rødland EA, Lagesen K, Seeberg E, Rognes T, Tønjum T (2004)
Biased distribution of DNA uptake sequences towards genome maintenance genes
Nucleic Acids Res, 32 (3), 1050-8
DOI 10.1093/nar/gkh255, PubMed 14960717

Review articles

Frederiksen RF, Slettemeås JS, Granstad S, Lagesen K, Pikkemaat MG, Urdahl AM, Simm R (2024)
Polyether ionophore resistance in a one health perspective
Front Microbiol, 15, 1347490
DOI 10.3389/fmicb.2024.1347490, PubMed 38351920

Vesth T, Wassenaar TM, Hallin PF, Snipen L, Lagesen K, Ussery DW (2010)
On the origins of a Vibrio species
Microb Ecol, 59 (1), 1-13
DOI 10.1007/s00248-009-9596-7, PubMed 19830476

Ambur OH, Davidsen T, Frye SA, Balasingham SV, Lagesen K, Rognes T, Tønjum T (2009)
Genome dynamics in major bacterial pathogens
FEMS Microbiol Rev, 33 (3), 453-70
DOI 10.1111/j.1574-6976.2009.00173.x, PubMed 19396949